1FPV

STRUCTURE DETERMINATION OF FELINE PANLEUKOPENIA VIRUS EMPTY PARTICLES


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure determination of feline panleukopenia virus empty particles.

Agbandje, M.McKenna, R.Rossmann, M.G.Strassheim, M.L.Parrish, C.R.

(1993) Proteins 16: 155-171

  • DOI: 10.1002/prot.340160204

  • PubMed Abstract: 
  • Various crystal forms of the single-stranded DNA, feline panleukopenia virus (FPV), a parvovirus, have been grown of both full virions and empty particles. The structure of empty particles crystallized in an orthorhombic space group P2(1)2(1)2(1), wi ...

    Various crystal forms of the single-stranded DNA, feline panleukopenia virus (FPV), a parvovirus, have been grown of both full virions and empty particles. The structure of empty particles crystallized in an orthorhombic space group P2(1)2(1)2(1), with unit cell dimensions a = 380.1 A, b = 379.3 A, and c = 350.9 A, has been determined to 3.3 A resolution. The data were collected using oscillation photography with synchrotron radiation. The orientations of the empty capsids in the unit cell were determined using a self-rotation function and their positions were obtained with an R-factor search using canine parvovirus (CPV) as a model. Phases were then calculated, based on the CPV model, to 6.0 A resolution and gradually extended to 3.3 A resolution by molecular replacement electron density averaging. The resultant electron density was readily interpreted in terms of the known amino acid sequence. The structure is contrasted to that of CPV in terms of host range, neutralization by antibodies, hemagglutination properties, and binding of genomic DNA.


    Related Citations: 
    • Mapping Specific Functions in the Capsid Structure of Canine Parvovirus and Feline Panleukopenia Virus Using Infectious Plasmid Clones
      Parrish, C.R.
      (1991) Virology 183: 195
    • Determination and Refinement of the Canine Parvovirus Empty Capsid Structure
      Wu, H.,Keller, W.,Rossmann, M.G.
      () TO BE PUBLISHED --: --
    • Structure Determination of Monoclinic Canine Parvovirus
      Tsao, J.,Chapman, M.S.,Wu, H.,Agbandje, M.,Keller, W.,Rossmann, M.G.
      (1992) Acta Crystallogr.,Sect.B 48: 75
    • The Three-Dimensional Structure of Canine Parvovirus and its Functional Implications
      Tsao, J.,Chapman, M.S.,Agbandje, M.,Keller, W.,Smith, K.,Wu, H.,Luo, M.,Smith, T.J.,Rossmann, M.G.,Compans, R.W.,Parrish, C.R.
      (1991) Science 251: 1456
    • The Canine Parvovirus Empty Capsid Structure
      Wu, H.,Rossmann, M.G.
      (1993) J.Mol.Biol. 233: 231
    • Preliminary X-Ray Crystallographic Analysis of Canine Parvovirus Crystals
      Luo, M.,Tsao, J.,Rossmann, M.G.,Basak, S.,Compans, R.W.
      (1988) J.Mol.Biol. 200: 209


    Organizational Affiliation

    Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
FELINE PANLEUKOPENIA VIRUS (STRAIN B) VIRAL PROTEIN 2
A
584Feline panleukopenia virus (strain 193)N/A
Find proteins for P24840 (Feline panleukopenia virus (strain 193))
Go to UniProtKB:  P24840
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 380.100α = 90.00
b = 379.300β = 90.00
c = 350.900γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1994-01-31
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance