1FN3 | pdb_00001fn3

CRYSTAL STRUCTURE OF NICKEL RECONSTITUTED HEMOGLOBIN-A CASE FOR PERMANENT, T-STATE HEMOGLOBIN

• PDB DOI: https://doi.org/10.2210/pdb1FN3/pdb

• Classification: OXYGEN STORAGE/TRANSPORT
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2000-08-20 Released: 2003-10-07 
• Deposition Author(s): Venkateshrao, S., Deepthi, S., Pattabhi, V., Manoharan, P.T.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.48 Å
• R-Value Free: 
  0.324 (Depositor) 
• R-Value Work: 
  0.242 (Depositor), 0.318 (DCC) 
• R-Value Observed: 
  0.244 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of Nickel Reconstituted Hemoglobin - A Case for Permanent, T-State Hemoglobin

Venkateshrao, S., Deepthi, S., Pattabhi, V., Manoharan, P.T.

(2003) Curr Sci 84: 179-187

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Hetero 4-mer - A2B2 Pseudo Symmetry: Dihedral - D2  (Explore in 3D)
Pseudo Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 64.56 kDa 
• Atom Count: 4,594 
• Modeled Residue Count: 574 
• Deposited Residue Count: 574 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HEMOGLOBIN ALPHA CHAIN	A, C	141	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P69905 (Homo sapiens) Explore P69905  Go to UniProtKB:  P69905
PHAROS:  P69905 GTEx:  ENSG00000188536 ENSG00000206172

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
HEMOGLOBIN BETA CHAIN	B, D	146	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P68871 (Homo sapiens) Explore P68871  Go to UniProtKB:  P68871
PHAROS:  P68871 GTEx:  ENSG00000244734

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
HNI	E [auth A], F [auth B], G [auth C], H [auth D]	PROTOPORPHYRIN IX CONTAINING NI(II) C34 H32 N4 Ni O4 IJROJBFZULUEEG-RGGAHWMASA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.48 Å
• R-Value Free:  0.324 (Depositor) 
• R-Value Work:  0.242 (Depositor), 0.318 (DCC) 
• R-Value Observed: 0.244 (Depositor) 

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 95.52	α = 90
b = 96.138	β = 90
c = 65.19	γ = 90

Software Package:

Software Name	Purpose
XDS	data scaling
AUTOMAR	data reduction
X-PLOR	model building
X-PLOR	refinement
XDS	data reduction
X-PLOR	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2003-10-07 
Deposition Author(s): Venkateshrao, S., Deepthi, S., Pattabhi, V., Manoharan, P.T.

Revision History  

• Version 1.0: 2003-10-07
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-10-04
  Changes: Refinement description
• Version 1.4: 2023-08-09
  Changes: Data collection, Database references, Derived calculations, Refinement description