1FIM

MACROPHAGE MIGRATION INHIBITORY FACTOR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.197 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of the macrophage migration inhibitory factor from rat liver.

Suzuki, M.Sugimoto, H.Nakagawa, A.Tanaka, I.Nishihira, J.Sakai, M.

(1996) Nat.Struct.Mol.Biol. 3: 259-266


  • PubMed Abstract: 
  • The tertiary structure of the macrophage migration inhibitory factor (MIF) from rat liver (12,300 Mr) is presented at 2.2 A resolution. Each monomer consists of two beta/alpha/beta motifs aligned in quasi two-fold symmetry, comprising a domain consis ...

    The tertiary structure of the macrophage migration inhibitory factor (MIF) from rat liver (12,300 Mr) is presented at 2.2 A resolution. Each monomer consists of two beta/alpha/beta motifs aligned in quasi two-fold symmetry, comprising a domain consisting of a four-stranded mixed beta-sheet and two antiparallel alpha-helices. The protein exists as a trimer in the crystal. An extra beta-strand that is almost perpendicular to the other beta-strands joins to the beta-sheet of the neighbouring monomer in the trimer. Unexpected similarities were detected between MIF and two kinds of isomerase.


    Related Citations: 
    • Crystallization of Rat Liver Macrophage Migration Inhibitory Factor for MAD Analysis
      Sugimoto, H.,Suzuki, M.,Nakagawa, A.,Tanaka, I.,Fujinaga, M.,Nishihira, J.
      (1995) J.Struct.Biol. 115: 331


    Organizational Affiliation

    Division of Biological Sciences, Graduate School of Science, Hokkaido University, Sapporo, Japan.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
MACROPHAGE MIGRATION INHIBITORY FACTOR
A
114Rattus norvegicusGene Names: Mif
EC: 5.3.2.1, 5.3.3.12
Find proteins for P30904 (Rattus norvegicus)
Go to UniProtKB:  P30904
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.197 
  • Space Group: P 63
Unit Cell:
Length (Å)Angle (°)
a = 61.800α = 90.00
b = 61.800β = 90.00
c = 53.400γ = 120.00
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
X-PLORphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1996-07-11
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2017-11-29
    Type: Derived calculations, Other