1F13

RECOMBINANT HUMAN CELLULAR COAGULATION FACTOR XIII


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.183 
  • R-Value Observed: 0.183 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Two non-proline cis peptide bonds may be important for factor XIII function.

Weiss, M.S.Metzner, H.J.Hilgenfeld, R.

(1998) FEBS Lett 423: 291-296

  • DOI: 10.1016/s0014-5793(98)00098-2
  • Primary Citation of Related Structures:  
    1F13

  • PubMed Abstract: 
  • The structure of recombinant human cellular factor XIII zymogen was solved in its monoclinic crystal form and refined to an R-factor of 18.3% (Rfree = 23.6%) for all data between 40.0 and 2.1 A resolution. Two non-proline cis peptide bonds were detected. One is between Arg310 and Tyr311 close to the active site cysteine residue (Cys314) and the other is between Gln425 and Phe426 at the dimerization interface ...

    The structure of recombinant human cellular factor XIII zymogen was solved in its monoclinic crystal form and refined to an R-factor of 18.3% (Rfree = 23.6%) for all data between 40.0 and 2.1 A resolution. Two non-proline cis peptide bonds were detected. One is between Arg310 and Tyr311 close to the active site cysteine residue (Cys314) and the other is between Gln425 and Phe426 at the dimerization interface. The structure and the role of these cis peptides are discussed in the light of their possible importance for factor XIII function.


    Related Citations: 
    • Structural Evidence that the Activation Peptide is not Released Upon Thrombin Cleavage of Factor Xiii
      Yee, V.C., Pedersen, L.C., Bishop, P.D., Stenkamp, R.E., Teller, D.C.
      (1995) Thromb Res 78: 389
    • Three-Dimensional Structure of a Transglutaminase: Human Blood Coagulation Factor Xiii
      Yee, V.C., Pedersen, L.C., Le Trong, I., Bishop, P.D., Stenkamp, R.E., Teller, D.C.
      (1994) Proc Natl Acad Sci U S A 91: 7296
    • Crystallization of Blood Coagulation Factor Xiii by an Automated Procedure
      Hilgenfeld, R., Liesum, A., Storm, R., Metzner, H.J., Karges, H.E.
      (1990) FEBS Lett 265: 110

    Organizational Affiliation

    Institute of Molecular Biotechnology, Department of Structural Biology and Crystallography, Jena, Germany.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
CELLULAR COAGULATION FACTOR XIII ZYMOGENA, B731Homo sapiensMutation(s): 0 
Gene Names: F13A1F13A
EC: 2.3.2.13
UniProt & NIH Common Fund Data Resources
Find proteins for P00488 (Homo sapiens)
Explore P00488 
Go to UniProtKB:  P00488
PHAROS:  P00488
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.183 
  • R-Value Observed: 0.183 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 134.59α = 90
b = 72.78β = 106.08
c = 101.05γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
DENZOdata reduction
SCALEPACKdata scaling
X-PLORphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1998-08-12
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance