1F13

RECOMBINANT HUMAN CELLULAR COAGULATION FACTOR XIII


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.183 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Two non-proline cis peptide bonds may be important for factor XIII function.

Weiss, M.S.Metzner, H.J.Hilgenfeld, R.

(1998) FEBS Lett. 423: 291-296


  • PubMed Abstract: 
  • The structure of recombinant human cellular factor XIII zymogen was solved in its monoclinic crystal form and refined to an R-factor of 18.3% (Rfree = 23.6%) for all data between 40.0 and 2.1 A resolution. Two non-proline cis peptide bonds were detec ...

    The structure of recombinant human cellular factor XIII zymogen was solved in its monoclinic crystal form and refined to an R-factor of 18.3% (Rfree = 23.6%) for all data between 40.0 and 2.1 A resolution. Two non-proline cis peptide bonds were detected. One is between Arg310 and Tyr311 close to the active site cysteine residue (Cys314) and the other is between Gln425 and Phe426 at the dimerization interface. The structure and the role of these cis peptides are discussed in the light of their possible importance for factor XIII function.


    Related Citations: 
    • Crystallization of Blood Coagulation Factor Xiii by an Automated Procedure
      Hilgenfeld, R.,Liesum, A.,Storm, R.,Metzner, H.J.,Karges, H.E.
      (1990) FEBS Lett. 265: 110
    • Structural Evidence that the Activation Peptide is not Released Upon Thrombin Cleavage of Factor Xiii
      Yee, V.C.,Pedersen, L.C.,Bishop, P.D.,Stenkamp, R.E.,Teller, D.C.
      (1995) Thromb.Res. 78: 389
    • Three-Dimensional Structure of a Transglutaminase: Human Blood Coagulation Factor Xiii
      Yee, V.C.,Pedersen, L.C.,Le Trong, I.,Bishop, P.D.,Stenkamp, R.E.,Teller, D.C.
      (1994) Proc.Natl.Acad.Sci.USA 91: 7296


    Organizational Affiliation

    Institute of Molecular Biotechnology, Department of Structural Biology and Crystallography, Jena, Germany.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CELLULAR COAGULATION FACTOR XIII ZYMOGEN
A, B
731Homo sapiensMutation(s): 0 
Gene Names: F13A1 (F13A)
EC: 2.3.2.13
Find proteins for P00488 (Homo sapiens)
Go to Gene View: F13A1
Go to UniProtKB:  P00488
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.183 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 134.590α = 90.00
b = 72.780β = 106.08
c = 101.050γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
X-PLORphasing
X-PLORmodel building
SCALEPACKdata scaling
X-PLORrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1998-08-12
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance