1F0I

THE FIRST CRYSTAL STRUCTURE OF A PHOSPHOLIPASE D


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.130 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The first crystal structure of a phospholipase D.

Leiros, I.Secundo, F.Zambonelli, C.Servi, S.Hough, E.

(2000) Structure Fold.Des. 8: 655-667

  • Also Cited By: 1V0Y, 1V0W, 1V0V, 1V0U, 1V0T, 1V0S, 1V0R, 1U52, 1U51, 1U50, 1U4Z, 1U4Y, 1U4X, 1U4W, 1U4V, 1U4U, 1U4T, 1TB2, 1TB1, 1TAV, 1TAO, 1TAK, 1TAJ, 1TAI

  • PubMed Abstract: 
  • The phospholipase D (PLD) superfamily includes enzymes that are involved in phospholipid metabolism, nucleases, toxins and virus envelope proteins of unknown function. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic a ...

    The phospholipase D (PLD) superfamily includes enzymes that are involved in phospholipid metabolism, nucleases, toxins and virus envelope proteins of unknown function. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. PLD also catalyses a transphosphatidylation reaction in the presence of phosphatidylcholine and a short-chained primary or secondary alcohol.


    Organizational Affiliation

    Department of Chemistry, Faculty of Science, University of Tromso, Norway.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PHOSPHOLIPASE D
A
504Streptomyces sp. (strain PMF)Mutation(s): 0 
EC: 3.1.4.4
Find proteins for P84147 (Streptomyces sp. (strain PMF))
Go to UniProtKB:  P84147
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.130 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 57.280α = 90.00
b = 57.420β = 93.17
c = 68.700γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
MLPHAREphasing
SHELXL-97refinement
CCP4data scaling
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2001-05-16
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Source and taxonomy, Version format compliance