1EZJ

CRYSTAL STRUCTURE OF THE MULTIMERIZATION DOMAIN OF THE PHOSPHOPROTEIN FROM SENDAI VIRUS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.293 
  • R-Value Work: 0.249 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Tetrameric coiled coil domain of Sendai virus phosphoprotein.

Tarbouriech, N.Curran, J.Ruigrok, R.W.Burmeister, W.P.

(2000) Nat.Struct.Mol.Biol. 7: 777-781

  • DOI: 10.1038/79013

  • PubMed Abstract: 
  • The high resolution X-ray structure of the Sendai virus oligomerization domain reveals a homotetrameric coiled coil structure with many details that are different from classic coiled coils with canonical hydrophobic heptad repeats. Alternatives to th ...

    The high resolution X-ray structure of the Sendai virus oligomerization domain reveals a homotetrameric coiled coil structure with many details that are different from classic coiled coils with canonical hydrophobic heptad repeats. Alternatives to the classic knobs-into-holes packing lead to differences in supercoil pitch and diameter that allow water molecules inside the core. This open and more hydrophilic structure does not seem to be destabilized by mutations that would be expected to disrupt classic coiled coils.


    Organizational Affiliation

    European Synchrotron Radiation Facility, Grenoble cedex, France.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NUCLEOCAPSID PHOSPHOPROTEIN
A
115Sendai virus (strain Harris)Gene Names: P/V/C
Find proteins for P04859 (Sendai virus (strain Harris))
Go to UniProtKB:  P04859
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
EMC
Query on EMC

Download SDF File 
Download CCD File 
A
ETHYL MERCURY ION
C2 H5 Hg
MJOUBOKSWBMNGQ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.293 
  • R-Value Work: 0.249 
  • Space Group: P 4 21 2
Unit Cell:
Length (Å)Angle (°)
a = 48.584α = 90.00
b = 48.584β = 90.00
c = 100.847γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
CCP4data scaling
SHARPphasing
CNSrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2000-09-20
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance
  • Version 1.3: 2011-11-16
    Type: Atomic model