1ETF

REV RESPONSE ELEMENT (RRE) RNA COMPLEXED WITH REV PEPTIDE, NMR, MINIMIZED AVERAGE STRUCTURE


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Submitted: 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex.

Battiste, J.L.Mao, H.Rao, N.S.Tan, R.Muhandiram, D.R.Kay, L.E.Frankel, A.D.Williamson, J.R.

(1996) Science 273: 1547-1551

  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • The solution structure of a human immunodeficiency virus type-1 (HIV-1) Rev peptide bound to stem-loop IIB of the Rev response element (RRE) RNA was solved by nuclear magnetic resonance spectroscopy. The Rev peptide has an alpha-helical conformation ...

    The solution structure of a human immunodeficiency virus type-1 (HIV-1) Rev peptide bound to stem-loop IIB of the Rev response element (RRE) RNA was solved by nuclear magnetic resonance spectroscopy. The Rev peptide has an alpha-helical conformation and binds in the major groove of the RNA near a purine-rich internal loop. Several arginine side chains make base-specific contacts, and an asparagine residue contacts a G.A base pair. The phosphate backbone adjacent to a G.G base pair adopts an unusual structure that allows the peptide to access a widened major groove. The structure formed by the two purine-purine base pairs of the RRE creates a distinctive binding pocket that the peptide can use for specific recognition.


    Related Citations: 
    • RNA Recognition by an Isolated Alpha Helix
      Tan, R.,Chen, L.,Buettner, J.A.,Hudson, D.,Frankel, A.D.
      (1993) Cell 73: 1031
    • Binding of an HIV Rev Peptide to Rev Responsive Element RNA Induces Formation of Purine-Purine Base Pairs
      Battiste, J.L.,Tan, R.,Frankel, A.D.,Williamson, J.R.
      (1994) Biochemistry 33: 2741
    • Assignment and Modeling of the Rev Response Element RNA Bound to a Rev Peptide Using 13C-Heteronuclear NMR
      Battiste, J.L.,Tan, R.,Frankel, A.D.,Williamson, J.R.
      (1995) J.Biomol.NMR 6: 375


    Organizational Affiliation

    Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
REV PEPTIDE
B
23Human immunodeficiency virus type 1 group M subtype BMutation(s): 0 
Gene Names: rev
Find proteins for P05866 (Human immunodeficiency virus type 1 group M subtype B)
Go to UniProtKB:  P05866
Entity ID: 1
MoleculeChainsLengthOrganism
REV RESPONSE ELEMENT RNAA34N/A
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Submitted: 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1997-03-12
    Type: Initial release
  • Version 1.1: 2008-03-03
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance