1EJ6

Reovirus core


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.6 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.206 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Structure of the reovirus core at 3.6 A resolution.

Reinisch, K.M.Nibert, M.L.Harrison, S.C.

(2000) Nature 404: 960-967

  • DOI: 10.1038/35010041

  • PubMed Abstract: 
  • The reovirus core is an assembly with a relative molecular mass of 52 million that synthesizes, modifies and exports viral messenger RNA. Analysis of its structure by X-ray crystallography shows that there are alternative, specific and completely non ...

    The reovirus core is an assembly with a relative molecular mass of 52 million that synthesizes, modifies and exports viral messenger RNA. Analysis of its structure by X-ray crystallography shows that there are alternative, specific and completely non-equivalent contacts made by several surfaces of two of its proteins; that the RNA capping and export apparatus is a hollow cylinder, which probably sequesters its substrate to ensure completion of the capping reactions; that the genomic double-stranded RNA is coiled into concentric layers within the particle; and that there is a protein shell that appears to be common to all groups of double-stranded RNA viruses.


    Organizational Affiliation

    Harvard University, Cambridge, Massachusetts 02138, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
LAMBDA2
A
1289Reovirus type 3 (strain Dearing)Mutation(s): 0 
Gene Names: L2
EC: 2.7.7.50, 2.1.1.56
Find proteins for P11079 (Reovirus type 3 (strain Dearing))
Go to UniProtKB:  P11079
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
LAMBDA1
B, C
1275Reovirus type 3 (strain Dearing)Mutation(s): 0 
Gene Names: L3
EC: 3.6.4.13
Find proteins for P15024 (Reovirus type 3 (strain Dearing))
Go to UniProtKB:  P15024
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
SIGMA2
D, E
418Reovirus type 1 (strain Lang)Mutation(s): 0 
Gene Names: S2
Find proteins for P11314 (Reovirus type 1 (strain Lang))
Go to UniProtKB:  P11314
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
C
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.6 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.206 
  • Space Group: F 4 3 2
Unit Cell:
Length (Å)Angle (°)
a = 1255.000α = 90.00
b = 1255.000β = 90.00
c = 1255.000γ = 90.00
Software Package:
Software NamePurpose
CCP4phasing
CCP4model building
CNSrefinement
RAVEphasing
CCP4data scaling
SCALAdata scaling
RAVEmodel building
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2000-07-12
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2017-10-04
    Type: Refinement description