1EAK

Catalytic domain of proMMP-2 E404Q mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.66 Å
  • R-Value Free: 0.303 
  • R-Value Work: 0.271 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal Structure of Human Mmp-2 Reveals a New P

Bergmann, U.Tuuttila, A.Morgunova, E.Tryggvason, K.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
72 KDA TYPE IV COLLAGENASE
A, B, C, D
421Homo sapiensMutation(s): 1 
Gene Names: MMP2 (CLG4A)
EC: 3.4.24.24
Find proteins for P08253 (Homo sapiens)
Go to Gene View: MMP2
Go to UniProtKB:  P08253
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
INHIBITOR PEPTIDE
P, R
8N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B, C, D
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A, B, C, D
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.66 Å
  • R-Value Free: 0.303 
  • R-Value Work: 0.271 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 117.670α = 90.00
b = 166.150β = 90.00
c = 170.130γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
AMoREphasing
CNSrefinement
SCALAdata scaling
ROTAPREPdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2002-08-22
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance
  • Version 1.2: 2016-12-21
    Type: Source and taxonomy
  • Version 1.3: 2018-06-13
    Type: Data collection