1EAH

PV2L COMPLEXED WITH ANTIVIRAL AGENT SCH48973


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Work: 0.185 
  • R-Value Observed: 0.185 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of poliovirus type 2 Lansing complexed with antiviral agent SCH48973: comparison of the structural and biological properties of three poliovirus serotypes.

Lentz, K.N.Smith, A.D.Geisler, S.C.Cox, S.Buontempo, P.Skelton, A.DeMartino, J.Rozhon, E.Schwartz, J.Girijavallabhan, V.O'Connell, J.Arnold, E.

(1997) Structure 5: 961-978

  • DOI: 10.1016/s0969-2126(97)00249-9
  • Primary Citation of Related Structures:  
    1EAH

  • PubMed Abstract: 
  • Polioviruses are human pathogens and the causative agents of poliomyelitis. Polioviruses are icosahedral single-stranded RNA viruses, which belong to the picornavirus family, and occur as three distinct serotypes. All three serotypes of poliovirus can infect primates, but only type 2 can infect mice ...

    Polioviruses are human pathogens and the causative agents of poliomyelitis. Polioviruses are icosahedral single-stranded RNA viruses, which belong to the picornavirus family, and occur as three distinct serotypes. All three serotypes of poliovirus can infect primates, but only type 2 can infect mice. The crystal structures of a type 1 and a type 3 poliovirus are already known. Structural studies of poliovirus type 2 Lansing (PV2L) were initiated to try to enhance our understanding of the differences in host range specificity, antigenicity and receptor binding among the three serotypes of poliovirus.


    Related Citations: 
    • Structures of Poliovirus Complexes with Anti-Viral Drugs: Implications for Viral Stability and Drug Design
      Grant, R.A., Hiremath, C.N., Filman, D.J., Syed, R., Andries, K., Hogle, J.M.
      (1994) Curr Biol 4: 784
    • Three Dimensional Structure-Activity Relationships for Antiviral Agents that Interact with Picornavirus Capsids
      Zhang, A., Nanni, R., Oren, D.A., Rozhon, E.J., Arnold, E.
      (1992) Semin Virol 3: 453
    • Three-Dimensional Structure of a Mouse-Adapted Type 2/Type 1 Poliovirus Chimera
      Yeates, T.O., Jacobson, D.H., Martin, A., Wychowski, C., Girard, M., Filman, D.J., Hogle, J.M.
      (1991) EMBO J 10: 2331
    • Structural Factors that Control Conformational Transitions and Serotype Specificity in Type 3 Poliovirus
      Filman, D.J., Syed, R., Chow, M., Macadam, A.J., Minor, P.D., Hogle, J.M.
      (1989) EMBO J 8: 1567
    • Three-Dimensional Structure of Poliovirus at 2.9 A Resolution
      Hogle, J.M., Chow, M., Filman, D.J.
      (1985) Science 229: 1358

    Organizational Affiliation

    Center for Advanced Biotechnology and Medicine, Piscataway, NJ 08854, USA.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4A [auth 1]301Human poliovirus 2Mutation(s): 0 
EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt)
UniProt
Find proteins for P06210 (Poliovirus type 2 (strain Lansing))
Explore P06210 
Go to UniProtKB:  P06210
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4B [auth 2]271Human poliovirus 2Mutation(s): 0 
EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt)
UniProt
Find proteins for P06210 (Poliovirus type 2 (strain Lansing))
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Protein Feature View
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  • Reference Sequence
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4C [auth 3]238Human poliovirus 2Mutation(s): 0 
EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt)
UniProt
Find proteins for P06210 (Poliovirus type 2 (strain Lansing))
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Protein Feature View
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  • Reference Sequence
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4D [auth 4]68Human poliovirus 2Mutation(s): 0 
EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt)
UniProt
Find proteins for P06210 (Poliovirus type 2 (strain Lansing))
Explore P06210 
Go to UniProtKB:  P06210
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SC4
Query on SC4

Download Ideal Coordinates CCD File 
E [auth 1]1[2-CHLORO-4-METHOXY-PHENYL-OXYMETHYL]-4-[2,6-DICHLORO-PHENYL-OXYMETHYL]-BENZENE
C21 H17 Cl3 O3
XXMDDBVNWRWNCW-UHFFFAOYSA-N
 Ligand Interaction
MYR
Query on MYR

Download Ideal Coordinates CCD File 
F [auth 4]MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Work: 0.185 
  • R-Value Observed: 0.185 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 345.7α = 90
b = 497.2β = 90
c = 485.9γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
DENZOdata reduction
X-PLORphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 1997-07-22 
  • Released Date: 1998-09-16 
  • Deposition Author(s): Lentz, K., Arnold, E.

Revision History  (Full details and data files)

  • Version 1.0: 1998-09-16
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance