1EAH

PV2L COMPLEXED WITH ANTIVIRAL AGENT SCH48973


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Work: 0.185 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of poliovirus type 2 Lansing complexed with antiviral agent SCH48973: comparison of the structural and biological properties of three poliovirus serotypes.

Lentz, K.N.Smith, A.D.Geisler, S.C.Cox, S.Buontempo, P.Skelton, A.DeMartino, J.Rozhon, E.Schwartz, J.Girijavallabhan, V.O'Connell, J.Arnold, E.

(1997) Structure 5: 961-978


  • PubMed Abstract: 
  • Polioviruses are human pathogens and the causative agents of poliomyelitis. Polioviruses are icosahedral single-stranded RNA viruses, which belong to the picornavirus family, and occur as three distinct serotypes. All three serotypes of poliovirus ca ...

    Polioviruses are human pathogens and the causative agents of poliomyelitis. Polioviruses are icosahedral single-stranded RNA viruses, which belong to the picornavirus family, and occur as three distinct serotypes. All three serotypes of poliovirus can infect primates, but only type 2 can infect mice. The crystal structures of a type 1 and a type 3 poliovirus are already known. Structural studies of poliovirus type 2 Lansing (PV2L) were initiated to try to enhance our understanding of the differences in host range specificity, antigenicity and receptor binding among the three serotypes of poliovirus.


    Related Citations: 
    • Structures of Poliovirus Complexes with Anti-Viral Drugs: Implications for Viral Stability and Drug Design
      Grant, R.A.,Hiremath, C.N.,Filman, D.J.,Syed, R.,Andries, K.,Hogle, J.M.
      (1994) Curr.Biol. 4: 784
    • Three-Dimensional Structure of a Mouse-Adapted Type 2/Type 1 Poliovirus Chimera
      Yeates, T.O.,Jacobson, D.H.,Martin, A.,Wychowski, C.,Girard, M.,Filman, D.J.,Hogle, J.M.
      (1991) Embo J. 10: 2331
    • Three-Dimensional Structure of Poliovirus at 2.9 A Resolution
      Hogle, J.M.,Chow, M.,Filman, D.J.
      (1985) Science 229: 1358
    • Three Dimensional Structure-Activity Relationships for Antiviral Agents that Interact with Picornavirus Capsids
      Zhang, A.,Nanni, R.,Oren, D.A.,Rozhon, E.J.,Arnold, E.
      (1992) Semin.Virol. 3: 453
    • Structural Factors that Control Conformational Transitions and Serotype Specificity in Type 3 Poliovirus
      Filman, D.J.,Syed, R.,Chow, M.,Macadam, A.J.,Minor, P.D.,Hogle, J.M.
      (1989) Embo J. 8: 1567


    Organizational Affiliation

    Center for Advanced Biotechnology and Medicine, Piscataway, NJ 08854, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4
1
301Poliovirus type 2 (strain Lansing)EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P06210 (Poliovirus type 2 (strain Lansing))
Go to UniProtKB:  P06210
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4
2
271Poliovirus type 2 (strain Lansing)EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P06210 (Poliovirus type 2 (strain Lansing))
Go to UniProtKB:  P06210
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4
3
238Poliovirus type 2 (strain Lansing)EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P06210 (Poliovirus type 2 (strain Lansing))
Go to UniProtKB:  P06210
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4
4
68Poliovirus type 2 (strain Lansing)EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P06210 (Poliovirus type 2 (strain Lansing))
Go to UniProtKB:  P06210
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MYR
Query on MYR

Download SDF File 
Download CCD File 
4
MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N
 Ligand Interaction
SC4
Query on SC4

Download SDF File 
Download CCD File 
1
1[2-CHLORO-4-METHOXY-PHENYL-OXYMETHYL]-4-[2,6-DICHLORO-PHENYL-OXYMETHYL]-BENZENE
C21 H17 Cl3 O3
XXMDDBVNWRWNCW-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Work: 0.185 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 345.700α = 90.00
b = 497.200β = 90.00
c = 485.900γ = 90.00
Software Package:
Software NamePurpose
X-PLORphasing
X-PLORmodel building
X-PLORrefinement
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 1997-07-22 
  • Released Date: 1998-09-16 
  • Deposition Author(s): Lentz, K., Arnold, E.

Revision History 

  • Version 1.0: 1998-09-16
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance