Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report | Ligand Interaction

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 18.09 kDa 
• Atom Count: 1260 
• Modelled Residue Count: 160 
• Deposited Residue Count: 160 
• Unique protein chains: 1

1E8B

Solution structure of 6F11F22F2, a compact three-module fragment of the gelatin-binding domain of human fibronectin

• PDB DOI: 10.2210/pdb1E8B/pdb

• Classification: CELL ADHESION
• Organism(s): Homo sapiens
• Expression System: Komagataella pastoris
• Mutation(s): No 


• Deposited: 2000-09-18 Released: 2000-10-15 
• Deposition Author(s): Pickford, A.R., Smith, S.P., Staunton, D., Boyd, J., Campbell, I.D.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Submitted: 1 

Literature

The Hairpin Structure of the (6)F1(1)F2(2)F2 Fragment from Human Fibronectin Enhances Gelatin Binding

Pickford, A.R., Smith, S.P., Staunton, D., Boyd, J., Campbell, I.D.

(2001) EMBO J 20: 1519

• PubMed: 11285216 
• DOI: 10.1093/emboj/20.7.1519
• Primary Citation of Related Structures:  
  1E88, 1E8B


• PubMed Abstract: 
  

The solution structure of the (6)F1(1)F2(2)F2 fragment from the gelatin-binding region of fibronectin has been determined (Protein Data Bank entry codes 1e88 and 1e8b). The structure reveals an extensive hydrophobic interface between the non-contiguous (6)F1 and (2)F2 modules. The buried surface area between (6)F1 and (2)F2 ( approximately 870 A(2)) is the largest intermodule interface seen in fibronectin to date. The dissection of (6)F1(1)F2(2)F2 into the (6)F1(1)F2 pair and (2)F2 results in near-complete loss of gelatin-binding activity. The hairpin topology of (6)F1(1)F2(2)F2 may facilitate intramolecular contact between the matrix assembly regions flanking the gelatin-binding domain. This is the first high-resolution study to reveal a compact, globular arrangement of modules in fibronectin. This arrangement is not consistent with the view that fibronectin is simply a linear 'string of beads'.

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Organizational Affiliation: 

Department of Biochemistry and Oxford Centre for Molecular Sciences, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
FIBRONECTIN	A	160	Homo sapiens	Mutation(s): 0  Gene Names: FN1, FN
UniProt & NIH Common Fund Data Resources
Find proteins for P02751 (Homo sapiens) Explore P02751  Go to UniProtKB:  P02751
PHAROS:  P02751

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG	B [auth A]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Submitted: 1 
• OLDERADO: 1E8B Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2000-09-18 
• Released Date: 2000-10-15 
Deposition Author(s): Pickford, A.R., Smith, S.P., Staunton, D., Boyd, J., Campbell, I.D.

Revision History  

• Version 1.0: 2000-10-15
  Type: Initial release
  
• Version 1.1: 2011-10-26
  Changes: Non-polymer description, Other, Structure summary, Version format compliance
• Version 1.2: 2012-11-28
  Changes: Database references, Derived calculations
• Version 1.3: 2018-02-14
  Changes: Data collection
• Version 1.4: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Data collection, Derived calculations, Other, Structure summary