1DZ0

REDUCED AZURIN II FROM ALCALIGENES XYLOSOXIDANS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structures of Oxidised and Reduced Azurin II from Alcaligenes Xylosoxidans at 1.75 Angstoms Resolution

Dodd, F.E.Abraham, Z.H.L.Eady, R.R.Hasnain, S.S.

(2000) Acta Crystallogr.,Sect.D 56: 690

  • Primary Citation of Related Structures:  1DYZ

  • PubMed Abstract: 
  • Crystallographic structures of oxidized and reduced forms of azurin II are reported at 1.75 A resolution. Data were collected using one crystal in each case and by translating the crystal after each oscillation range to minimize photoreduction. Very ...

    Crystallographic structures of oxidized and reduced forms of azurin II are reported at 1.75 A resolution. Data were collected using one crystal in each case and by translating the crystal after each oscillation range to minimize photoreduction. Very small differences are observed at the Cu site upon reduction and these cannot be determined with confidence at current resolution. A comparison with the three-dimensional EXAFS reveals a good correspondence for all the ligand distances except for Cu-His46, where a larger deviation of approximately 0.12-0.18 A is observed, indicating that this ligand is more tightly restrained in the crystallographic refinement at the current resolution.


    Related Citations: 
    • Structure of a New Azurin from Alcaligenes Xylosoxidans at High Resolution
      Dodd, F.E.,Hasnain, S.S.,Abraham, Z.H.L.,Eady, R.R.,Smith, B.E.
      (1995) Acta Crystallogr.,Sect.D 51: 1052


    Organizational Affiliation

    Synchrotron Radiation Department, CCLRC Daresbury Laboratory, Warrington, England.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
AZURIN II
A
129Alcaligenes xylosoxydans xylosoxydansN/A
Find proteins for P56275 (Alcaligenes xylosoxydans xylosoxydans)
Go to UniProtKB:  P56275
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CU1
Query on CU1

Download SDF File 
Download CCD File 
A
COPPER (I) ION
Cu
VMQMZMRVKUZKQL-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.192 
  • Space Group: P 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 52.650α = 90.00
b = 52.650β = 90.00
c = 100.630γ = 90.00
Software Package:
Software NamePurpose
WEISdata reduction
X-PLORrefinement
X-PLORphasing
CCP4data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2000-07-04
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Source and taxonomy, Version format compliance