1DXS

Crystal structure of the C-terminal sterile alpha motif (SAM) domain of human p73 alpha splice variant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.54 Å
  • R-Value Free: 0.346 
  • R-Value Work: 0.275 
  • R-Value Observed: 0.275 

wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

Structure of the C-Terminal Sterile Alpha-Motif (Sam) Domain of Human P73 Alpha

Wang, W.K.Bycroft, M.Foster, N.W.Buckle, A.M.Fersht, A.R.Chen, Y.W.

(2001) Acta Crystallogr D Biol Crystallogr 57: 545

  • DOI: 10.1107/s0907444901002529
  • Primary Citation of Related Structures:  
    1DXS

  • PubMed Abstract: 
  • p73 is a homologue of the tumour suppressor p53 and contains all three functional domains of p53. The alpha-splice variant of p73 (p73 alpha) contains near its C-terminus an additional structural domain known as the sterile alpha-motif (SAM) that is probably responsible for regulating p53-like functions of p73 ...

    p73 is a homologue of the tumour suppressor p53 and contains all three functional domains of p53. The alpha-splice variant of p73 (p73 alpha) contains near its C-terminus an additional structural domain known as the sterile alpha-motif (SAM) that is probably responsible for regulating p53-like functions of p73. Here, the 2.54 A resolution crystal structure of this protein domain is reported. The crystal structure and the published solution structure have the same five-helix bundle fold that is characteristic of all SAM-domain structures, with an overall r.m.s.d. of 1.5 A for main-chain atoms. The hydrophobic core residues are well conserved, yet some large local differences are observed. The crystal structure reveals a dimeric organization, with the interface residues forming a mini four-helix bundle. However, analysis of solvation free energies and the surface area buried upon dimer formation indicated that this arrangement is more likely to be an effect of crystal packing rather than reflecting a physiological state. This is consistent with the solution structure being a monomer. The p73 alpha SAM domain also contains several interesting structural features: a Cys-X-X-Cys motif, a 3(10)-helix and a loop that have elevated B factors, and short tight inter-helical loops including two beta-turns; these elements are probably important in the normal function of this domain.


    Related Citations: 
    • Crystallization and Preliminary Crystallographic Studies of a Sam Domain at the C-Terminus of Human P73 Alpha
      Wang, W.K., Proctor, M., Buckle, A.M., Bycroft, M., Chen, Y.W.
      (2000) Acta Crystallogr D Biol Crystallogr 56: 769
    • Solution Structure of a Conserved C-Terminal Domain of P73 with Structural Homology to the Sam Domain
      Chi, S.-W., Ayed, A., Arrowsmith, C.H.
      (1999) EMBO J 18: 4438

    Organizational Affiliation

    Centre for Protein Engineering and Cambridge University Chemical Laboratory, MRC Centre, Hills Road, Cambridge CB2 2QH, England.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
P53-LIKE TRANSCRIPTION FACTORA80Homo sapiensMutation(s): 0 
Gene Names: P73TP73
UniProt & NIH Common Fund Data Resources
Find proteins for O15350 (Homo sapiens)
Explore O15350 
Go to UniProtKB:  O15350
PHAROS:  O15350
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.54 Å
  • R-Value Free: 0.346 
  • R-Value Work: 0.275 
  • R-Value Observed: 0.275 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 32.02α = 90
b = 32.02β = 90
c = 133.84γ = 90
Software Package:
Software NamePurpose
CNSrefinement
iMOSFLMdata reduction
SCALAdata scaling
AMoREphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2000-01-15 
  • Released Date: 2001-01-12 
  • Deposition Author(s): Wang, W.K., Chen, Y.W.

Revision History  (Full details and data files)

  • Version 1.0: 2001-01-12
    Type: Initial release
  • Version 1.1: 2011-05-07
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-07-05
    Changes: Data collection
  • Version 1.4: 2018-01-24
    Changes: Source and taxonomy
  • Version 1.5: 2019-02-06
    Changes: Data collection, Experimental preparation