Biological Assembly 1  

 3D View: Structure | Electron Density | Validation Report | Ligand Interaction

Global Symmetry: Dihedral - D2  (3D View)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content

• Total Structure Weight: 40.74 kDa 
• Atom Count: 2988 
• Modelled Residue Count: 344 
• Deposited Residue Count: 361 
• Unique protein chains: 1

1DHS

CRYSTAL STRUCTURE OF THE NAD COMPLEX OF HUMAN DEOXYHYPUSINE SYNTHASE

• DOI: 10.2210/pdb1DHS/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 1997-10-28 Released: 1998-02-25 
• Deposition Author(s): Liao, D.-I., Davies, D.R.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 0.242 
• R-Value Work: 0.153 
• R-Value Observed: 0.153 

Literature

Crystal structure of the NAD complex of human deoxyhypusine synthase: an enzyme with a ball-and-chain mechanism for blocking the active site.

Liao, D.I., Wolff, E.C., Park, M.H., Davies, D.R.

(1998) Structure 6: 23-32

• PubMed: 9493264 
• DOI: 10.1016/s0969-2126(98)00004-5
• Primary Citation of Related Structures:  
  1DHS


• PubMed Abstract: 
  

Eukaryotic initiation factor 5A (elF-5A) contains an unusual amino acid, hypusine [N epsilon-(4-aminobutyl-2-hydroxy)lysine]. The first step in the post-translational formation of hypusine is catalysed by the enzyme deoxyhypusine synthase (DHS). The modified version of elF-5A, and DHS, are required for eukaryotic cell proliferation. Knowledge of the three-dimensional structure of this key enzyme should permit the design of specific inhibitors that may be useful as anti-proliferative agents.

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Organizational Affiliation: 

Laboratory of Molecular Biology, NIDDK, NIH, Bethesda, MD 20892-0560, USA.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DEOXYHYPUSINE SYNTHASE	A	361	Homo sapiens	Mutation(s): 0  Gene Names: DHPS, DS EC: 2.5.1.46
UniProt & NIH Common Fund Data Resources
Find proteins for P49366 (Homo sapiens) Explore P49366  Go to UniProtKB:  P49366
PHAROS:  P49366 GTEx:  ENSG00000095059

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAD (Subject of Investigation/LOI)	B [auth A]	NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 0.242 
• R-Value Work: 0.153 
• R-Value Observed: 0.153 
• Space Group: P 4 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 108.3	α = 90
b = 108.3	β = 90
c = 69.5	γ = 90

Software Package:

Software Name	Purpose
PHASES	phasing
X-PLOR	model building
X-PLOR	refinement
DENZO	data reduction
SCALEPACK	data scaling
X-PLOR	phasing

Structure Validation

Ligand Structure Quality Assessment  

Entry History 

Deposition Data

• Deposited Date: 1997-10-28 
• Released Date: 1998-02-25 
Deposition Author(s): Liao, D.-I., Davies, D.R.

Revision History  

• Version 1.0: 1998-02-25
  Type: Initial release
  
• Version 1.1: 2008-03-24
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Version format compliance
• Version 1.3: 2021-06-23
  Changes: Derived calculations, Structure summary