Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 9.29 kDa 
• Atom Count: 654 
• Modelled Residue Count: 81 
• Deposited Residue Count: 81 
• Unique protein chains: 1

1D8K

SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA

• PDB DOI: 10.2210/pdb1D8K/pdb
• BMRB: 4721

• Classification: GENE REGULATION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 1999-10-25 Released: 2000-04-26 
• Deposition Author(s): Okuda, M., Watanabe, Y., Okamura, H., Hanaoka, F., Ohkuma, Y., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 1 
• Selection Criteria: LEAST RESTRAINT VIOLATIONS 

Literature

Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface.

Okuda, M., Watanabe, Y., Okamura, H., Hanaoka, F., Ohkuma, Y., Nishimura, Y.

(2000) EMBO J 19: 1346-1356

• PubMed: 10716934 
• DOI: 10.1093/emboj/19.6.1346
• Primary Citation of Related Structures:  
  1D8J, 1D8K


• PubMed Abstract: 
  

Human general transcription factor TFIIE consists of two subunits, TFIIEalpha and TFIIEbeta. Recently, TFIIEbeta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. Here, the central core domain of human TFIIEbeta (TFIIEbetac) has been identified by a limited proteolysis. This solution structure has been determined by NMR. It consists of three helices with a beta hairpin at the C-terminus, resembling the winged helix proteins. However, TFIIEbetac shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow. A model will be proposed that TFIIE stabilizes the preinitiation complex by binding not only to the general transcription factors together with RNA polymerase II but also to the promoter DNA, where double-stranded DNA starts to open to be single-stranded upon activation of the preinitiation complex.

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Organizational Affiliation: 

Graduate School of Integrated Science, Yokohama City University, 22-2 Seto, Kanazawa-ku, Yokohama 236-0027, USA.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GENERAL TRANSCRIPTION FACTOR TFIIE-BETA	A	81	Homo sapiens	Mutation(s): 0  Gene Names: GTF2E2, TF2E2
UniProt & NIH Common Fund Data Resources
Find proteins for P29084 (Homo sapiens) Explore P29084  Go to UniProtKB:  P29084
PHAROS:  P29084

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 1 
• Selection Criteria: LEAST RESTRAINT VIOLATIONS 
• OLDERADO: 1D8K Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 1999-10-25 
• Released Date: 2000-04-26 
Deposition Author(s): Okuda, M., Watanabe, Y., Okamura, H., Hanaoka, F., Ohkuma, Y., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2000-04-26
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-02-16
  Changes: Data collection, Database references, Derived calculations