1D7Q | pdb_00001d7q

HUMAN TRANSLATION INITIATION FACTOR EIF1A


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report

Validation slider image for 1D7Q

This is version 1.4 of the entry. See complete history

Literature

The eIF1A solution structure reveals a large RNA-binding surface important for scanning function.

Battiste, J.L.Pestova, T.V.Hellen, C.U.Wagner, G.

(2000) Mol Cell 5: 109-119

  • DOI: https://doi.org/10.1016/s1097-2765(00)80407-4
  • Primary Citation Related Structures: 
    1D7Q

  • PubMed Abstract: 

    The translation initiation factor eIF1A is necessary for directing the 43S preinitiation complex from the 5' end of the mRNA to the initiation codon in a process termed scanning. We have determined the solution structure of human eIF1A, which reveals an oligonucleotide-binding (OB) fold and an additional domain. NMR titration experiments showed that eIF1A binds single-stranded RNA oligonucleotides in a site-specific, but non-sequence-specific manner, hinting at an mRNA interaction rather than specific rRNA or tRNA binding. The RNA binding surface extends over a large area covering the canonical OB fold binding site as well as a groove leading to the second domain. Site-directed mutations at multiple positions along the RNA-binding surface were defective in the ability to properly assemble preinitiation complexes at the AUG codon in vitro.


  • Organizational Affiliation
    • Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, USA.

Macromolecule Content 

  • Total Structure Weight: 18.08 kDa 
  • Atom Count: 1,266 
  • Modeled Residue Count: 157 
  • Deposited Residue Count: 157 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
PROTEIN (N-TERMINAL HISTIDINE TAG)A [auth B]14N/AMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
TRANSLATION INITIATION FACTOR 1AB [auth A]143Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P47813 (Homo sapiens)
Explore P47813 
Go to UniProtKB:  P47813
PHAROS:  P47813
GTEx:  ENSG00000173674 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP47813
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2000-03-17
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-02-16
    Changes: Data collection, Database references, Derived calculations, Experimental preparation
  • Version 1.4: 2024-05-22
    Changes: Data collection