1D7A

CRYSTAL STRUCTURE OF E. COLI PURE-MONONUCLEOTIDE COMPLEX.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.203 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of Escherichia coli PurE, an unusual mutase in the purine biosynthetic pathway.

Mathews, I.I.Kappock, T.J.Stubbe, J.Ealick, S.E.

(1999) Structure Fold.Des. 7: 1395-1406

  • Primary Citation of Related Structures:  1QCZ

  • PubMed Abstract: 
  • Conversion of 5-aminoimidazole ribonucleotide (AIR) to 4-carboxyaminoimidazole ribonucleotide (CAIR) in Escherichia coli requires two proteins - PurK and PurE. PurE has recently been shown to be a mutase that catalyzes the unusual rearrangement of N( ...

    Conversion of 5-aminoimidazole ribonucleotide (AIR) to 4-carboxyaminoimidazole ribonucleotide (CAIR) in Escherichia coli requires two proteins - PurK and PurE. PurE has recently been shown to be a mutase that catalyzes the unusual rearrangement of N(5)-carboxyaminoimidazole ribonucleotide (N(5)-CAIR), the PurK reaction product, to CAIR. PurEs from higher eukaryotes are homologous to E. coli PurE, but use AIR and CO(2) as substrates to produce CAIR directly.


    Related Citations: 
    • Identification and Sequence Analysis of Escherichia Coli Pure and Purk Genes Encoding 5'-Phosphoribosyl-5-Amino-4-Imidazole Carboxylase for De Novo Purine Biosynthesis
      Watanabe, W.,Sampei, G.,Aiba, A.,Mizobuchi, K.
      (1989) J.Bacteriol. 171: 198
    • Evidence for the Direct Transfer of the Carboxylate of N5-Carboxyaminoimidazole Ribonucleotide (N5-Cair) to Generate 4-Carboxy-5- Aminoimidazole Ribonucleotide Catalyzed by Escherichia Coli Pure, an N5-Cair Mutase
      Meyer, E.,Kappock, T.J.,Osuji, C.,Stubbe, J.
      (1999) Biochemistry 38: 3012
    • Reactions Catalyzed by 5-Aminoimidazole Ribonucleotide Carboxylases from Escherichia Coli and Gallus Gallus: A Case for Divergent Catalytic Mechanisms
      Firestine, S.M.,Poon, S.W.,Mueller, E.J.,Stubbe, J.,Davisson, V.J.
      (1994) Biochemistry 33: 11927
    • N5-Carboxyaminoimidazole Ribonucleotide: Evidence for a New Intermediate and Two New Enzymatic Activities in the De Novo Purine Biosynthetic Pathway of Escherichia Coli
      Mueller, E.J.,Meyer, E.,Rudolph, J.,Davisson, V.J.,Stubbe, J.
      (1994) Biochemistry 33: 2269
    • Nucleotide Sequence Analysis of the Purek Operon Encoding 5'-Phosphoribosyl-5-Aminoimidazole Carboxylase of Escherichia Coli K-12
      Tiedeman, A.A.,Keyhani, J.,Kamholz, J.,Daum 3rd, H.A.,Gots, J.S.,Smith, J.M.
      (1989) J.Bacteriol. 171: 205


    Organizational Affiliation

    Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE
A, B, C, D, L, M, N, O
161Escherichia coli (strain K12)Gene Names: purE
EC: 5.4.99.18
Find proteins for P0AG18 (Escherichia coli (strain K12))
Go to UniProtKB:  P0AG18
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
AIR
Query on AIR

Download SDF File 
Download CCD File 
A, B, C, D
5-AMINOIMIDAZOLE RIBONUCLEOTIDE
C8 H14 N3 O7 P
PDACUKOKVHBVHJ-XVFCMESISA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, L, M, N, O
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.203 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 86.920α = 90.00
b = 94.550β = 90.00
c = 149.960γ = 90.00
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORphasing
CCP4data scaling
X-PLORrefinement
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1999-12-03
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance