1D4M

THE CRYSTAL STRUCTURE OF COXSACKIEVIRUS A9 TO 2.9 A RESOLUTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Work: 0.169 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The crystal structure of coxsackievirus A9: new insights into the uncoating mechanisms of enteroviruses.

Hendry, E.Hatanaka, H.Fry, E.Smyth, M.Tate, J.Stanway, G.Santti, J.Maaronen, M.Hyypia, T.Stuart, D.

(1999) Structure Fold.Des. 7: 1527-1538


  • PubMed Abstract: 
  • Coxsackievirus A9 (CAV9), a human pathogen causing symptoms ranging from common colds to fatal infections of the central nervous system, is an icosahedral single-stranded RNA virus that belongs to the genus Enterovirus of the family Picornaviridae. O ...

    Coxsackievirus A9 (CAV9), a human pathogen causing symptoms ranging from common colds to fatal infections of the central nervous system, is an icosahedral single-stranded RNA virus that belongs to the genus Enterovirus of the family Picornaviridae. One of the four capsid proteins, VP1, includes the arginine-glycine-aspartate (RGD) motif within its C-terminal extension. This region binds to integrin alpha v beta 3, the only receptor for CAV9 to be conclusively identified to date.


    Related Citations: 
    • Preliminary Crystallographic Analysis of Coxsackievirus A9
      Smyth, M.,Hall, J.,Fry, E.,Stuart, D.,Stanway, G.,Hyypia, T.
      (1993) J.Mol.Biol. 230: 667


    Organizational Affiliation

    Laboratory of Molecular Biophysics, Oxford, UK.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PROTEIN (COXSACKIEVIRUS A9)
1
299Coxsackievirus A9 (strain Griggs)EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P21404 (Coxsackievirus A9 (strain Griggs))
Go to UniProtKB:  P21404
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
PROTEIN (COXSACKIEVIRUS A9)
2
261Coxsackievirus A9 (strain Griggs)EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P21404 (Coxsackievirus A9 (strain Griggs))
Go to UniProtKB:  P21404
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
PROTEIN (COXSACKIEVIRUS A9)
3
238Coxsackievirus A9 (strain Griggs)EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P21404 (Coxsackievirus A9 (strain Griggs))
Go to UniProtKB:  P21404
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
PROTEIN (COXSACKIEVIRUS A9)
4
68Coxsackievirus A9 (strain Griggs)EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P21404 (Coxsackievirus A9 (strain Griggs))
Go to UniProtKB:  P21404
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MYR
Query on MYR

Download SDF File 
Download CCD File 
4
MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N
 Ligand Interaction
W71
Query on W71

Download SDF File 
Download CCD File 
1
5-(7-(4-(4,5-DIHYDRO-2-OXAZOLYL)PHENOXY)HEPTYL)-3-METHYL ISOXAZOLE
COMPOUND IV
C20 H26 N2 O3
FKLJPTJMIBLJAV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Work: 0.169 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 487.300α = 90.00
b = 358.100β = 128.10
c = 305.700γ = 90.00
Software Package:
Software NamePurpose
X-PLORmodel building
SCALEPACKdata scaling
X-PLORrefinement
X-PLORphasing
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1999-12-23
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance