1D4M

THE CRYSTAL STRUCTURE OF COXSACKIEVIRUS A9 TO 2.9 A RESOLUTION

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Work: 0.169 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history. 

Literature

The crystal structure of coxsackievirus A9: new insights into the uncoating mechanisms of enteroviruses.

Hendry, E., Hatanaka, H., Fry, E., Smyth, M., Tate, J., Stanway, G., Santti, J., Maaronen, M., Hyypia, T., Stuart, D.

(1999) Structure Fold.Des. 7: 1527-1538


  • PubMed Abstract: 

    • Coxsackievirus A9 (CAV9), a human pathogen causing symptoms ranging from common colds to fatal infections of the central nervous system, is an icosahedral single-stranded RNA virus that belongs to the genus Enterovirus of the family Picornaviridae. O ...

    Coxsackievirus A9 (CAV9), a human pathogen causing symptoms ranging from common colds to fatal infections of the central nervous system, is an icosahedral single-stranded RNA virus that belongs to the genus Enterovirus of the family Picornaviridae. One of the four capsid proteins, VP1, includes the arginine-glycine-aspartate (RGD) motif within its C-terminal extension. This region binds to integrin alpha v beta 3, the only receptor for CAV9 to be conclusively identified to date.

    Related Citations: 
    • Preliminary Crystallographic Analysis of Coxsackievirus A9
      Smyth, M.,Hall, J.,Fry, E.,Stuart, D.,Stanway, G.,Hyypia, T.
      (1993) J.Mol.Biol. 230: 667

    Organizational Affiliation: 

    Laboratory of Molecular Biophysics, Oxford, UK.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PROTEIN (COXSACKIEVIRUS A9)
1
299Coxsackievirus A9 (strain Griggs)Mutation(s): 0 
Find proteins for P21404 (Coxsackievirus A9 (strain Griggs))
Go to UniProtKB:  P21404
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
PROTEIN (COXSACKIEVIRUS A9)
2
261Coxsackievirus A9 (strain Griggs)Mutation(s): 0 
Find proteins for P21404 (Coxsackievirus A9 (strain Griggs))
Go to UniProtKB:  P21404
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
PROTEIN (COXSACKIEVIRUS A9)
3
238Coxsackievirus A9 (strain Griggs)Mutation(s): 0 
Find proteins for P21404 (Coxsackievirus A9 (strain Griggs))
Go to UniProtKB:  P21404
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
PROTEIN (COXSACKIEVIRUS A9)
4
68Coxsackievirus A9 (strain Griggs)Mutation(s): 0 
Find proteins for P21404 (Coxsackievirus A9 (strain Griggs))
Go to UniProtKB:  P21404
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MYR
Query on MYR
Download SDF File 
Download CCD File 
4
MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N
 Ligand Interaction
W71
Query on W71
Download SDF File 
Download CCD File 
1
5-(7-(4-(4,5-DIHYDRO-2-OXAZOLYL)PHENOXY)HEPTYL)-3-METHYL ISOXAZOLE
COMPOUND IV
C20 H26 N2 O3
FKLJPTJMIBLJAV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Work: 0.169 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 487.300α = 90.00
b = 358.100β = 128.10
c = 305.700γ = 90.00
Software Package:
Software NamePurpose
X-PLORmodel building
SCALEPACKdata scaling
X-PLORrefinement
X-PLORphasing
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1999-12-23
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance