1D3L

D1D2-ICAM-1 FULLY GLYCOSYLATED, VARIATION OF D1-D2 INTERDOMAIN ANGLE IN DIFFERENT CRYSTAL STRUCTURES.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Work: 0.371 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural studies of two rhinovirus serotypes complexed with fragments of their cellular receptor.

Kolatkar, P.R.Bella, J.Olson, N.H.Bator, C.M.Baker, T.S.Rossmann, M.G.

(1999) EMBO J. 18: 6249-6259

  • DOI: 10.1093/emboj/18.22.6249
  • Primary Citation of Related Structures:  1D3E, 1D3I

  • PubMed Abstract: 
  • Two human rhinovirus serotypes complexed with two- and five-domain soluble fragments of the cellular receptor, intercellular adhesion molecule-1, have been investigated by X-ray crystallographic analyses of the individual components and by cryo-elect ...

    Two human rhinovirus serotypes complexed with two- and five-domain soluble fragments of the cellular receptor, intercellular adhesion molecule-1, have been investigated by X-ray crystallographic analyses of the individual components and by cryo-electron microscopy of the complexes. The three-dimensional image reconstructions provide a molecular envelope within which the crystal structures of the viruses and the receptor fragments can be positioned with accuracy. The N-terminal domain of the receptor binds to the rhinovirus 'canyon' surrounding the icosahedral 5-fold axes. Fitting of molecular models into the image reconstruction density identified the residues on the virus that interact with those on the receptor surface, demonstrating complementarity of the electrostatic patterns for the tip of the N-terminal receptor domain and the floor of the canyon. The complexes seen in the image reconstructions probably represent the first stage of a multistep binding process. A mechanism is proposed for the subsequent viral uncoating process.


    Related Citations: 
    • The Structure of the Two Amino-Terminal Domains of Human Icam-1 Suggests How It Functions as a Rhinovirus Receptor and as an Lfa-1 Integrin Ligand.
      Bella, J.,Kolatkar, P.R.,Marlor, C.W.,Greve, J.M.,Rossmann, M.G.
      (1998) Proc.Natl.Acad.Sci.USA 95: 4140
    • Preliminary X-Ray Crystallographic Analysis of Intercellular Adhesion Molecule-1
      Kolatkar, P.R.,Oliveira, M.A.,Rossmann, M.G.,Robbins, A.H.,Katti, S.,Hoover-Litty, H.,Forte, C.,Greve, J.M.,Mcclelland, A.,Olson, N.H.
      (1992) J.Mol.Biol. 225: 1127
    • A Dimeric Crystal Structure for the N-Terminal Two Domains of Intercellular Adhesion Molecule-1
      Casasnovas, J.M.,Stehle, T.,Liu, J.H.,Wang, J.H.,Springer, T.A.
      (1998) Proc.Natl.Acad.Sci.USA 95: 4134


    Organizational Affiliation

    Department of Biological Sciences, Purdue University, West Lafayette, IN 47907-1392, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PROTEIN (INTERCELLULAR ADHESION MOLECULE-1)
A
185Homo sapiensGene Names: ICAM1
Find proteins for P05362 (Homo sapiens)
Go to Gene View: ICAM1
Go to UniProtKB:  P05362
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Work: 0.371 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 54.070α = 90.00
b = 54.070β = 90.00
c = 145.770γ = 120.00
Software Package:
Software NamePurpose
AMoREphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1999-12-01
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance