1CWF

HUMAN CYCLOPHILIN A COMPLEXED WITH 2-VAL CYCLOSPORIN

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Work: 0.177 
  • R-Value Observed: 0.177 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history. 


Literature

X-Ray Structures and Analysis of 11 Cyclosporin Derivatives Complexed with Cyclophilin A.

Kallen, J., Mikol, V., Taylor, P., Walkinshaw, M.D.

(1998) J Mol Biol 283: 435

  • DOI: 10.1006/jmbi.1998.2108
  • Primary Citation of Related Structures:  
    1CWL, 1CWK, 1CWJ, 1CWI, 1CWH, 1CWF, 1CWM, 1BCK

  • PubMed Abstract: 

    • Eight new X-ray structures of different cyclophilin A/cyclosporin-derivative complexes are presented. These structures, combined with the existing three published cyclosporin complexes, provide a useful structural database for the analysis of protein ...

    Eight new X-ray structures of different cyclophilin A/cyclosporin-derivative complexes are presented. These structures, combined with the existing three published cyclosporin complexes, provide a useful structural database for the analysis of protein-ligand interactions. The effect of small chemical differences on protein-ligand hydrogen-bonding, van der Waals interactions and water structure is presented.

    Organizational Affiliation: 

    The University of Edinburgh, Michael Swann Building, Edinburgh, EH9 3JR, UK.



Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE AA165Homo sapiensMutation(s): 0 
Gene Names: CYCLOPHILIN, PPIA, CYPA
EC: 5.2.1.8
Find proteins for P62937 (Homo sapiens)
Explore P62937 
Go to UniProtKB:  P62937
NIH Common Fund Data Resources
PHAROS  P62937
GTEx  ENSG00000196262
Protein Feature View
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  • Reference Sequence
  • Find similar proteins by:  Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
CYCLOSPORIN DC11Tolypocladium inflatumMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Small Molecules
Modified Residues  4 Unique
IDChainsTypeFormula2D DiagramParent
BMT
Query on BMT		CL-PEPTIDE LINKINGC10 H19 N O3THR
MLE
Query on MLE		CL-PEPTIDE LINKINGC7 H15 N O2LEU
MVA
Query on MVA		CL-PEPTIDE LINKINGC6 H13 N O2VAL
SAR
Query on SAR		CPEPTIDE LINKINGC3 H7 N O2GLY
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2
IDChainsNameType/Class2D Diagram3D Interactions
PRD_001132
Query on PRD_001132		CMutant CYCLOSPORIN DCyclic peptide /  Immunosuppressant

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Work: 0.177 
  • R-Value Observed: 0.177 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 36.4α = 90
b = 61.42β = 90
c = 72.42γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
X-PLORphasing

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1998-07-15
    Type: Initial release
  • Version 1.1: 2011-06-14
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2011-07-27
    Changes: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary
  • Version 1.4: 2012-12-12
    Changes: Other