Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 16.23 kDa 
• Atom Count: 1141 
• Modelled Residue Count: 138 
• Deposited Residue Count: 138 
• Unique protein chains: 1

1CL3

MOLECULAR INSIGHTS INTO PEBP2/CBF-SMMHC ASSOCIATED ACUTE LEUKEMIA REVEALED FROM THE THREE-DIMENSIONAL STRUCTURE OF PEBP2/CBF BETA

• PDB DOI: 10.2210/pdb1CL3/pdb

• Classification: GENE REGULATION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 1999-05-04 Released: 2000-01-01 
• Deposition Author(s): Goger, M., Gupta, V., Kim, W.Y., Shigesada, K., Ito, Y., Werner, M.H.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 25 
• Selection Criteria: LEAST CONSTRAINT VIOLATION 

Literature

Molecular insights into PEBP2/CBF beta-SMMHC associated acute leukemia revealed from the structure of PEBP2/CBF beta

Goger, M., Gupta, V., Kim, W.Y., Shigesada, K., Ito, Y., Werner, M.H.

(1999) Nat Struct Biol 6: 620-623

• PubMed: 10404215 
• DOI: 10.1038/10664
• Primary Citation of Related Structures:  
  1CL3


• PubMed Abstract: 
  

PEBP2/CBF is a heterodimeric transcription factor essential for genetic regulation of hematopoiesis and osteogenesis. DNA binding by PEBP2/CBF alpha is accomplished by a highly conserved DNA binding domain, the Runt domain (RD), whose structure adopts an S-type immunoglobulin fold when bound to DNA. The supplementary subunit beta enhances DNA binding by the RD in vitro, but its role in the control of gene expression has remained largely unknown in vivo. Chromosome 16 inversion creates a chimeric gene product fusing PEBP2/CBF beta to a portion of the smooth muscle myosin heavy chain (PEBP2/CBF beta-SMMHC) that is causally associated with the onset of acute myeloid leukemia in humans. The three-dimensional structure of PEBP2/CBF beta has been determined in solution and is shown to adopt a fold related to the beta-barrel oligomer binding motif. Direct analysis of a 43.6 kD ternary RD-beta-DNA complex identifies the likely surface of beta in contact with the RD. The structure of PEBP2/CBF beta enables a molecular understanding of the capacity of PEBP2/CBF beta-SMMHC to sequester PEBP2/CBF alpha in the cytoplasm and therefore provides a molecular basis for understanding leukemogenic transformation.

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Organizational Affiliation: 

Laboratory of Molecular Biophysics, The Rockefeller University, New York, NY 10021, USA.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
POLYOMAVIRUS ENHANCER BINDING PROTEIN 2	A	138	Homo sapiens	Mutation(s): 0  Gene Names: CBFB
UniProt & NIH Common Fund Data Resources
Find proteins for Q13951 (Homo sapiens) Explore Q13951  Go to UniProtKB:  Q13951
PHAROS:  Q13951

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 25 
• Selection Criteria: LEAST CONSTRAINT VIOLATION 
• OLDERADO: 1CL3 Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 1999-05-04 
• Released Date: 2000-01-01 
Deposition Author(s): Goger, M., Gupta, V., Kim, W.Y., Shigesada, K., Ito, Y., Werner, M.H.

Revision History  

• Version 1.0: 2000-01-01
  Type: Initial release
  
• Version 1.1: 2008-04-26
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-02-16
  Changes: Database references, Derived calculations