Structure of human apolactoferrin at 2.0 A resolution. Refinement and analysis of ligand-induced conformational change.Jameson, G.B., Anderson, B.F., Norris, G.E., Thomas, D.H., Baker, E.N.
(1998) Acta Crystallogr.,Sect.D 54: 1319-1335
- PubMed: 10089508
- DOI: 10.1107/s0907444998004417
- PubMed Abstract:
- Apolactoferrin structure demonstrates ligand-induced conformational change in transferrins.
Anderson, B.F.,Baker, H.M.,Norris, G.E.,Rumball, S.V.,Baker, E.N.
(1990) Nature 344: 784
- Structure of human lactoferrin: crystallographic structure analysis and refinement at 2.8 A resolution.
Anderson, B.F.,Baker, H.M.,Norris, G.E.,Rice, D.W.,Baker, E.N.
(1989) J.Mol.Biol. 209: 711
- Transferrins: Insights Into Structure and Function from Studies on Lactoferrin
Baker, E.N.,Rumball, S.V.,Anderson, B.F.
(1987) Trends Biochem.Sci. 12: 350
- Structure of human lactoferrin at 3.2-A resolution.
Anderson, B.F.,Baker, H.M.,Dodson, E.J.,Norris, G.E.,Rumball, S.V.,Waters, J.M.,Baker, E.N.
(1987) Proc.Natl.Acad.Sci.USA 84: 1769
The three-dimensional structure of a form of human apolactoferrin, in which one lobe (the N-lobe) has an open conformation and the other lobe (the C-lobe) is closed, has been refined at 2.0 A resolution. The refinement, by restrained least-squares me ...
The three-dimensional structure of a form of human apolactoferrin, in which one lobe (the N-lobe) has an open conformation and the other lobe (the C-lobe) is closed, has been refined at 2.0 A resolution. The refinement, by restrained least-squares methods, used synchrotron radiation X-ray diffraction data combined with a lower resolution diffractometer data set. The final refined model (5346 protein atoms from residues 1-691, two Cl- ions and 363 water molecules) gives a crystallographic R factor of 0.201 (Rfree = 0. 286) for all 51305 reflections in the resolution range 10.0-2.0 A. The conformational change in the N-lobe, which opens up the binding cleft, involves a 54 degrees rotation of the N2 domain relative to the N1 domain. This also results in a small reorientation of the two lobes relative to one another with a further approximately 730 A2 of surface area being buried as the N2 domain contacts the C-lobe and the inter-lobe helix. These new contacts also involve the C-terminal helix and provide a mechanism through which the conformational and iron-binding status of the N-lobe can be signalled to the C-lobe. Surface-area calculations indicate a fine balance between open and closed forms of lactoferrin, which both have essentially the same solvent-accessible surface. Chloride ions are bound in the anion-binding sites of both lobes, emphasizing the functional significance of these sites. The closed configuration of the C-lobe, attributed in part to weak stabilization by crystal packing interactions, has important implications for lactoferrin dynamics. It shows that a stable closed structure, essentially identical to that of the iron-bound form, can be formed in the absence of iron binding.
Department of Chemistry, Massey University, Palmerston North, New Zealand.