Download MendeleyTHE REFINED STRUCTURE OF A PICORNAVIRUS INHIBITOR CURRENTLY IN CLINICAL TRIALS, WHEN COMPLEXED WITH HUMAN RHINOVIRUS 16
CHAKRAVARTY, S., BATOR, C.M., PEVEAR, D.C., DIANA, G.D., ROSSMANN, M.G.To be published.
1C8M
REFINED CRYSTAL STRUCTURE OF HUMAN RHINOVIRUS 16 COMPLEXED WITH VP63843 (PLECONARIL), AN ANTI-PICORNAVIRAL DRUG CURRENTLY IN CLINICAL TRIALS
- PDB DOI: 10.2210/pdb1C8M/pdb
- Classification: VIRUS
- Organism(s): rhinovirus A16
- Mutation(s): No
- Deposited: 2000-05-26 Released: 2000-11-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.226
- R-Value Work: 0.219
- R-Value Observed: 0.243
wwPDB Validation 3D Report Full Report
This is version 2.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HUMAN RHINOVIRUS 16 COAT PROTEIN | A [auth 1] | 285 | rhinovirus A16 | Mutation(s): 0 EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt) |  |
UniProt | |||||
Find proteins for Q82122 (Human rhinovirus 16) Explore Q82122 Go to UniProtKB: Q82122 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q82122 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HUMAN RHINOVIRUS 16 COAT PROTEIN | B [auth 2] | 252 | rhinovirus A16 | Mutation(s): 0 EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt) |  |
UniProt | |||||
Find proteins for Q82122 (Human rhinovirus 16) Explore Q82122 Go to UniProtKB: Q82122 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q82122 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HUMAN RHINOVIRUS 16 COAT PROTEIN | C [auth 3] | 238 | rhinovirus A16 | Mutation(s): 0 EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt) |  |
UniProt | |||||
Find proteins for Q82122 (Human rhinovirus 16) Explore Q82122 Go to UniProtKB: Q82122 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q82122 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HUMAN RHINOVIRUS 16 COAT PROTEIN | D [auth 4] | 77 | rhinovirus A16 | Mutation(s): 0 EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt) |  |
UniProt | |||||
Find proteins for Q82122 (Human rhinovirus 16) Explore Q82122 Go to UniProtKB: Q82122 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q82122 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| W11 Query on W11 | F [auth 1] | 3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5-YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE C18 H18 F3 N3 O3 KQOXLKOJHVFTRN-UHFFFAOYSA-N |  | Ligand Interaction | |
| ZN Query on ZN | E [auth 1] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.226
- R-Value Work: 0.219
- R-Value Observed: 0.243
- Space Group: P 2 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 360.3 | α = 90 |
| b = 343.33 | β = 90 |
| c = 332.63 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CCP4 | model building |
| X-PLOR | refinement |
| DENZO | data reduction |
| SnB | phasing |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2000-11-22 Deposition Author(s): Chakravarty, S., Bator, C.M., Pevear, D.C., Diana, G.D., Rossmann, M.G.
Revision History (Full details and data files)
- Version 1.0: 2000-11-22
Type: Initial release - Version 1.1: 2008-04-26
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-10-04
Changes: Refinement description - Version 2.0: 2023-02-08
Type: Remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Other, Refinement description - Version 2.1: 2023-03-15
Changes: Advisory
