1C3G | pdb_00001c3g

S. CEREVISIAE HEAT SHOCK PROTEIN 40 SIS1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 
    0.311 (Depositor), 0.334 (DCC) 
  • R-Value Work: 
    0.265 (Depositor), 0.269 (DCC) 
  • R-Value Observed: 
    0.265 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 1C3G

This is version 1.4 of the entry. See complete history

Literature

The crystal structure of the peptide-binding fragment from the yeast Hsp40 protein Sis1.

Sha, B.Lee, S.Cyr, D.M.

(2000) Structure 8: 799-807

  • DOI: https://doi.org/10.1016/s0969-2126(00)00170-2
  • Primary Citation Related Structures: 
    1C3G

  • PubMed Abstract: 

    Molecular chaperone Hsp40 can bind non-native polypeptide and facilitate Hsp70 in protein refolding. How Hsp40 and other chaperones distinguish between the folded and unfolded states of proteins to bind nonnative polypeptides is a fundamental issue. To investigate this mechanism, we determined the crystal structure of the peptide-binding fragment of Sis1, an essential member of the Hsp40 family from Saccharomyces cerevisiae. The 2.7 A structure reveals that Sis1 forms a homodimer in the crystal by a crystallographic twofold axis. Sis1 monomers are elongated and consist of two domains with similar folds. Sis1 dimerizes through a short C-terminal stretch. The Sis1 dimer has a U-shaped architecture and a large cleft is formed between the two elongated monomers. Domain I in each monomer contains a hydrophobic depression that might be involved in binding the sidechains of hydrophobic amino acids. Sis1 (1-337), which lacks the dimerization motif, exhibited severe defects in chaperone activity, but could regulate Hsp70 ATPase activity. Thus, dimer formation is critical for Sis1 chaperone function. We propose that the Sis1 cleft functions as a docking site for the Hsp70 peptide-binding domain and that Sis1-Hsp70 interaction serves to facilitate the efficient transfer of peptides from Sis1 to Hsp70.


  • Organizational Affiliation
    • Center for Macromolecular Crystallography, University of Alabama at Birmingham, 35294-0005, USA. Sha@cmc.uab.edu

Macromolecule Content 

  • Total Structure Weight: 19.1 kDa 
  • Atom Count: 1,379 
  • Modeled Residue Count: 170 
  • Deposited Residue Count: 170 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
HEAT SHOCK PROTEIN 40170Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P25294 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P25294 
Go to UniProtKB:  P25294
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP25294
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free:  0.311 (Depositor), 0.334 (DCC) 
  • R-Value Work:  0.265 (Depositor), 0.269 (DCC) 
  • R-Value Observed: 0.265 (Depositor) 
Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 73.42α = 90
b = 73.42β = 90
c = 80.09γ = 90
Software Package:
Software NamePurpose
MADSYSphasing
CNSrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2000-08-03
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2018-01-31
    Changes: Experimental preparation
  • Version 1.4: 2024-02-07
    Changes: Data collection, Database references