1BUB | pdb_00001bub

DETERMINATION OF INTERNUCLEAR ANGLES OF DNA USING PARAMAGNETIC ASSISTED MAGNETIC ALIGNMENT

• PDB DOI: https://doi.org/10.2210/pdb1BUB/pdb
• NAKB: 1BUB

• Classification: DNA
• Mutation(s): No 


• Deposited: 1998-09-03 Released: 1998-09-09 
• Deposition Author(s): Marathias, V.M., Beger, R.D., Bolton, P.H.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Submitted: 1 
• Selection Criteria: MINIMIZED AVERAGE 

Literature

Determination of internuclear angles of DNA using paramagnetic-assisted magnetic alignment.

Beger, R.D., Marathias, V.M., Volkman, B.F., Bolton, P.H.

(1998) J Magn Reson (1969 135: 256-259

• PubMed: 9799703 
• DOI: https://doi.org/10.1006/jmre.1998.1527
• Primary Citation Related Structures: 
  1BUB


• PubMed Abstract: 
  

  Paramagnetic ions have been used to assist the magnetic alignment of DNA. The anisotropy of the binding sites is sufficient to give rise to significant alignment of the DNA with the observed proton-carbon dipolar couplings spanning a 70-Hz range. The dipolar couplings have been used to determine the positions of the axial and rhombic alignment axes. The positions of the alignment axes relative to the positions of the binding sites of the paramagnetic europium ions have also been determined.

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Organizational Affiliation: 
• Chemistry Department, Wesleyan University, Middletown, Connecticut, 06459, USA.

Biological Assembly 1  

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 5.05 kDa 
• Atom Count: 317 
• Modeled Residue Count: 15 
• Deposited Residue Count: 15 
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3')	A	15	N/A

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
EU	B [auth A], C [auth A]	EUROPIUM ION Eu MGVUQZZTJGLWJV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Submitted: 1 
• Selection Criteria: MINIMIZED AVERAGE 

Structure Validation

Entry History 

Deposition Data

• Released Date: 1998-09-09 
Deposition Author(s): Marathias, V.M., Beger, R.D., Bolton, P.H.

Revision History  

• Version 1.0: 1998-09-09
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-02-16
  Changes: Database references, Derived calculations, Experimental preparation
• Version 1.4: 2024-05-22
  Changes: Data collection