1BKM

COCRYSTAL STRUCTURE OF D-AMINO ACID SUBSTITUTED PHOSPHOPEPTIDE COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.200 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure-Based Design of a Novel Series of Nonpeptide Ligands that Bind to the Pp60Src Sh2 Domain

Holland, D.R.Lunney, E.A.Plummer, M.S.Mueller, W.T.Mcconnell, P.Pavlovsky, A.Para, K.S.Shahripour, A.Humblet, C.Sawyer, T.K.Rubin, J.R.

(1997) J.Am.Chem.Soc. 119: 12471


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PP60 V-SRC TYROSINE KINASE TRANSFORMING PROTEIN
A
113Avian leukosis virus RSAGene Names: V-SRC
EC: 2.7.10.2
Find proteins for P00524 (Avian leukosis virus RSA)
Go to UniProtKB:  P00524
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
1C5
Query on 1C5

Download SDF File 
Download CCD File 
A
[[O-PHOSPHONO-N-ACETYL-TYROSINYL]-GLUTAMYL-3[CYCLOHEXYLMETHYL]ALANINYL]-AMINE
C26 H39 N4 O10 P
MYZLOAXXVDGNMQ-FSSWDIPSSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
1C5IC50: 1800 - 2000 nM (96) BINDINGDB
1C5IC50: 1800 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.275 
  • R-Value Work: 0.200 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 30.200α = 90.00
b = 46.900β = 90.00
c = 74.520γ = 90.00
Software Package:
Software NamePurpose
X-PLORrefinement
XDSdata scaling
X-PLORphasing
XDSdata reduction
X-PLORmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1997-07-07
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance