1BHQ

MAC-1 I DOMAIN CADMIUM COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Work: 0.175 
  • R-Value Observed: 0.175 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Cation binding to the integrin CD11b I domain and activation model assessment

Baldwin, E.T.Sarver, R.W.Bryant Jr., G.L.Curry, K.A.Fairbanks, M.B.Finzel, B.C.Garlick, R.L.Heinrikson, R.L.Horton, N.C.Kelley, L.L.Mildner, A.M.Moon, J.B.Mott, J.E.Mutchler, V.T.Tomich, C.S.Watenpaugh, K.D.Wiley, V.H.

(1998) Structure 6: 923-935

  • DOI: 10.1016/s0969-2126(98)00093-8
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • The integrin family of cell-surface receptors mediate cell adhesion through interactions with the extracellular matrix or other cell-surface receptors. The alpha chain of some integrin heterodimers includes an inserted 'I domain' of about 200 amino a ...

    The integrin family of cell-surface receptors mediate cell adhesion through interactions with the extracellular matrix or other cell-surface receptors. The alpha chain of some integrin heterodimers includes an inserted 'I domain' of about 200 amino acids which binds divalent metal ions and is essential for integrin function. Lee et al. proposed that the I domain of the integrin CD11b adopts a unique 'active' conformation when bound to its counter receptor. In addition, they proposed that the lack of adhesion in the presence of Ca2+ ion reflected the stabilization of an 'inactive' I-domain conformation. We set out to independently determine the structure of the CD11 b I domain and to evaluate the structural effects of divalent ion binding to this protein.


    Organizational Affiliation

    Structural, Analytical & Medicinal Chemistry, Pharmacia & Upjohn, Inc., Kalamazoo, MI 49001, USA. eric.t.baldwin@am.pnu.com



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CD11B1, 2189Homo sapiensMutation(s): 0 
Gene Names: ITGAMCD11BCR3A
Find proteins for P11215 (Homo sapiens)
Explore P11215 
Go to UniProtKB:  P11215
NIH Common Fund Data Resources
PHAROS  P11215
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CD
Query on CD

Download CCD File 
1, 2
CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
 Ligand Interaction
ACE
Query on ACE

Download CCD File 
1, 2
ACETYL GROUP
C2 H4 O
IKHGUXGNUITLKF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Work: 0.175 
  • R-Value Observed: 0.175 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 48.42α = 90
b = 122.39β = 90
c = 75.36γ = 90
Software Package:
Software NamePurpose
PROLSQrefinement
XENGENdata reduction
XENGENdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 1998-06-10 
  • Released Date: 1998-11-04 
  • Deposition Author(s): Baldwin, E.T.

Revision History 

  • Version 1.0: 1998-11-04
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2018-03-07
    Changes: Data collection, Other