1BEV

BOVINE ENTEROVIRUS VG-5-27


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Work: 0.225 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Implications for viral uncoating from the structure of bovine enterovirus.

Smyth, M.Tate, J.Hoey, E.Lyons, C.Martin, S.Stuart, D.

(1995) Nat.Struct.Mol.Biol. 2: 224-231


  • PubMed Abstract: 
  • We have determined the crystal structure of a bovine enterovirus, revealing that the topologies of the major capsid proteins and the overall architecture of the virion are similar to those of related picornaviruses. The external loops joining beta-st ...

    We have determined the crystal structure of a bovine enterovirus, revealing that the topologies of the major capsid proteins and the overall architecture of the virion are similar to those of related picornaviruses. The external loops joining beta-strands are truncated and the canyon region is partially filled by an extension of the VP3 G-H loop giving the viral capsid a relatively smooth appearance. These changes may have implications for cell attachment. In spite of these differences the virus maintains a hydrophobic pocket within VP1, occupied by a specific 'pocket factor' which appears to be myristic acid. These observations support the proposal that a kinetic equilibrium exists between occupied and unoccupied pocket states, with occupation inhibiting uncoating.


    Related Citations: 
    • Preliminary Crystallographic Analysis of Bovine Enterovirus
      Smyth, M.,Fry, E.,Stuart, D.,Lyons, C.,Hoey, E.,Martin, S.J.
      (1993) J.Mol.Biol. 231: 930
    • Chemically Synthesized Peptides Elicit Neutralizing Antibody to Bovine Enterovirus
      Smyth, M.S.,Hoey, E.M.,Trudgett, A.,Martin, S.J.,Brown, F.
      (1990) J.Gen.Virol. 71: 231
    • The Complete Nucleotide Sequence of a Bovine Enterovirus
      Earle, J.A.,Skuce, R.A.,Fleming, C.S.,Hoey, E.M.,Martin, S.J.
      (1988) J.Gen.Virol. 69: 253


    Organizational Affiliation

    Laboratory of Molecular Biophysics, Oxford, UK.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4
1
281Bovine enterovirus (strain VG-5-27)EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P12915 (Bovine enterovirus (strain VG-5-27))
Go to UniProtKB:  P12915
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4
2
248Bovine enterovirus (strain VG-5-27)EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P12915 (Bovine enterovirus (strain VG-5-27))
Go to UniProtKB:  P12915
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4
3
242Bovine enterovirus (strain VG-5-27)EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P12915 (Bovine enterovirus (strain VG-5-27))
Go to UniProtKB:  P12915
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4
4
68Bovine enterovirus (strain VG-5-27)EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P12915 (Bovine enterovirus (strain VG-5-27))
Go to UniProtKB:  P12915
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MYR
Query on MYR

Download SDF File 
Download CCD File 
1
MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
1, 2
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Work: 0.225 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 388.200α = 90.00
b = 392.600β = 112.70
c = 360.700γ = 90.00
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORphasing
DENZOdata reduction
X-PLORrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1998-09-16
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance