1BE7 | pdb_00001be7

CLOSTRIDIUM PASTEURIANUM RUBREDOXIN C42S MUTANT

PDB DOI: https://doi.org/10.2210/pdb1BE7/pdb

Classification: ELECTRON TRANSPORT
Organism(s): Clostridium pasteurianum
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 1998-05-20 Released: 1998-09-23
Deposition Author(s): Maher, M., Guss, J.M., Wilce, M., Wedd, A.G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free:
0.201 (Depositor), 0.186 (DCC)
R-Value Work:
0.171 (Depositor), 0.155 (DCC)

Starting Model: experimental
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Literature

The Rubredoxin from Clostridium Pasteurianum: Mutation of the Iron Cysteinyl Ligands to Serine. Crystal and Molecular Structures of the Oxidised and Dithionite-Treated Forms of the Cys42Ser Mutant

Xiao, Z., Lavery, M.J., Ayhan, M., Scrofani, S.D.B., Wilce, M.C.J., Guss, J.M., Tregloan, P.A., George, G.N., Wedd, A.G.

(1998) J Am Chem Soc 120: 4135

Macromolecule Content

Total Structure Weight: 6.09 kDa
Atom Count: 459
Modeled Residue Count: 54
Deposited Residue Count: 54
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RUBREDOXIN	A	54	Clostridium pasteurianum	Mutation(s): 1 Gene Names: CLORUB
UniProt
Find proteins for P00268 (Clostridium pasteurianum) Explore P00268 Go to UniProtKB: P00268
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P00268
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FE Query on FE Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free: 0.201 (Depositor), 0.186 (DCC)
R-Value Work: 0.171 (Depositor), 0.155 (DCC)

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.52	α = 90
b = 64.52	β = 90
c = 32.57	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 1998-09-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 1998-09-23
Type: Initial release
Version 1.1: 2008-03-24
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2021-11-03
Changes: Database references, Derived calculations, Other
Version 1.4: 2023-08-02
Changes: Refinement description
Version 1.5: 2024-05-22
Changes: Data collection

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