1B3P

5'-D(*GP*GP*AP*GP*GP*AP*T)-3'


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 15 
  • Selection Criteria: ACCEPTABLE COVALENT GEOMETRY, LOW DISTANCE RESTRAINTS VIIOLATIONS AND FAVORABLE NON-BONDED ENERGY VALUES 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Interlocked mismatch-aligned arrowhead DNA motifs.

Kettani, A.Bouaziz, S.Skripkin, E.Majumdar, A.Wang, W.Jones, R.A.Patel, D.J.

(1999) Structure Fold.Des. 7: 803-815


  • PubMed Abstract: 
  • Triplet repeat sequences are of considerable biological importance as the expansion of such tandem arrays can lead to the onset of a range of human diseases. Such sequences can self-pair via mismatch alignments to form higher order structures that ha ...

    Triplet repeat sequences are of considerable biological importance as the expansion of such tandem arrays can lead to the onset of a range of human diseases. Such sequences can self-pair via mismatch alignments to form higher order structures that have the potential to cause replication blocks, followed by strand slippage and sequence expansion. The all-purine d(GGA)n triplet repeat sequence is of particular interest because purines can align via G.G, A.A and G.A mismatch formation.


    Organizational Affiliation

    Cellular Biochemistry and Biophysics Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10021, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*GP*GP*AP*GP*GP*AP*T)-3')A,B7N/A
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 15 
  • Selection Criteria: ACCEPTABLE COVALENT GEOMETRY, LOW DISTANCE RESTRAINTS VIIOLATIONS AND FAVORABLE NON-BONDED ENERGY VALUES 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1999-08-31
    Type: Initial release
  • Version 1.1: 2008-04-26
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance