1AVZ

V-1 NEF PROTEIN IN COMPLEX WITH WILD TYPE FYN SH3 DOMAIN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.220 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The crystal structure of HIV-1 Nef protein bound to the Fyn kinase SH3 domain suggests a role for this complex in altered T cell receptor signaling.

Arold, S.Franken, P.Strub, M.P.Hoh, F.Benichou, S.Benarous, R.Dumas, C.

(1997) Structure 5: 1361-1372

  • Primary Citation of Related Structures:  1AVV
  • Also Cited By: 4D8D

  • PubMed Abstract: 
  • Human immunodeficiency virus (HIV) Nef protein accelerates virulent progression of acquired immunodeficiency syndrome (AIDS) by its interaction with specific cellular proteins involved in signal transduction and host cell activation. Nef has been sho ...

    Human immunodeficiency virus (HIV) Nef protein accelerates virulent progression of acquired immunodeficiency syndrome (AIDS) by its interaction with specific cellular proteins involved in signal transduction and host cell activation. Nef has been shown to bind specifically to a subset of the Src family of kinases. The structures of free Nef and Nef bound to Src homology region 3 (SH3) domain are important for the elucidation of how the affinity and specificity for the Src kinase family SH3 domains are achieved, and also for the development of potential drugs and vaccines against AIDS.


    Related Citations: 
    • Crystal Structure of the Conserved Core of HIV-1 Nef Complexed with a Src Family SH3 Domain
      Lee, C.H.,Saksela, K.,Mirza, U.A.,Chait, B.T.,Kuriyan, J.
      (1996) Cell 85: 931
    • The Solution Structure of HIV-1 Nef Reveals an Unexpected Fold and Permits Delineation of the Binding Surface for the SH3 Domain of HCK Tyrosine Protein Kinase
      Grzesiek, S.,Bax, A.,Clore, G.M.,Gronenborn, A.M.,Hu, J.S.,Kaufman, J.,Palmer, I.,Stahl, S.J.,Wingfield, P.T.
      (1996) Nat.Struct.Mol.Biol. 3: 340


    Organizational Affiliation

    Centre de Biochimie Structurale, UMR C9955 CNRS, U414 INSERM, Université Montpellier I, Faculté de Pharmacie, France.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NEGATIVE FACTOR
A, B
151Human immunodeficiency virus type 1 group M subtype BGene Names: nef
Find proteins for P03406 (Human immunodeficiency virus type 1 group M subtype B)
Go to UniProtKB:  P03406
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
FYN TYROSINE KINASE
C
57Homo sapiensGene Names: FYN
EC: 2.7.10.2
Find proteins for P06241 (Homo sapiens)
Go to Gene View: FYN
Go to UniProtKB:  P06241
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.220 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 108.200α = 90.00
b = 108.200β = 90.00
c = 223.700γ = 120.00
Software Package:
Software NamePurpose
XSCALEdata scaling
X-PLORphasing
X-PLORmodel building
X-PLORrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1998-03-25
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance