1AOE

CANDIDA ALBICANS DIHYDROFOLATE REDUCTASE COMPLEXED WITH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE (NADPH) AND 1,3-DIAMINO-7-(1-ETHYEPROPYE)-7H-PYRRALO-[3,2-F]QUINAZOLINE (GW345)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Work: 0.155 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

X-ray crystallographic studies of Candida albicans dihydrofolate reductase. High resolution structures of the holoenzyme and an inhibited ternary complex.

Whitlow, M.Howard, A.J.Stewart, D.Hardman, K.D.Kuyper, L.F.Baccanari, D.P.Fling, M.E.Tansik, R.L.

(1997) J.Biol.Chem. 272: 30289-30298

  • Primary Citation of Related Structures:  1AI9, 1M78, 1M79, 1M7A

  • PubMed Abstract: 
  • The recent rise in systemic fungal infections has created a need for the development of new antifungal agents. As part of an effort to provide therapeutically effective inhibitors of fungal dihydrofolate reductase (DHFR), we have cloned, expressed, p ...

    The recent rise in systemic fungal infections has created a need for the development of new antifungal agents. As part of an effort to provide therapeutically effective inhibitors of fungal dihydrofolate reductase (DHFR), we have cloned, expressed, purified, crystallized, and determined the three-dimensional structure of Candida albicans DHFR. The 192-residue enzyme, which was expressed in Escherichia coli and purified by methotrexate affinity and cation exchange chromatography, was 27% identical to human DHFR. Crystals of C. albicans DHFR were grown as the holoenzyme complex and as a ternary complex containing a pyrroloquinazoline inhibitor. Both complexes crystallized with two molecules in the asymmetric unit in space group P21. The final structures had R-factors of 0.199 at 1.85-A resolution and 0.155 at 1.60-A resolution, respectively. The enzyme fold was similar to that of bacterial and vertebrate DHFR, and the binding of a nonselective diaminopyrroloquinazoline inhibitor and the interactions of NADPH with protein were typical of ligand binding to other DHFRs. However, the width of the active site cleft of C. albicans DHFR was significantly larger than that of the human enzyme, providing a basis for the design of potentially selective inhibitors.


    Related Citations: 
    • High-Affinity Inhibitors of Dihydrofolate Reductase: Antimicrobial and Anticancer Activities of 7,8-Dialkyl-1,3-Diaminopyrrolo[3,2-F]Quinazolines with Small Molecular Size
      Kuyper, L.F.,Baccanari, D.P.,Jones, M.L.,Hunter, R.N.,Tansik, R.L.,Joyner, S.S.,Boytos, C.M.,Rudolph, S.K.,Knick, V.,Wilson, H.R.,Caddell, J.M.,Friedman, H.S.,Comley, J.C.,Stables, J.N.
      (1996) J.Med.Chem. 39: 892
    • Characterization of Candida Albicans Dihydrofolate Reductase
      Baccanari, D.P.,Tansik, R.L.,Joyner, S.S.,Fling, M.E.,Smith, P.L.,Freisheim, J.H.
      (1989) J.Biol.Chem. 264: 1100


    Organizational Affiliation

    Genex Corporation, Protein Engineering Department, Gaithersburg, Maryland 20877, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DIHYDROFOLATE REDUCTASE
A, B
192Candida albicansGene Names: DFR1
EC: 1.5.1.3
Find proteins for P22906 (Candida albicans)
Go to UniProtKB:  P22906
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GW3
Query on GW3

Download SDF File 
Download CCD File 
A, B
7-(1-ETHYL-PROPYL)-7H-PYRROLO-[3,2-F]QUINAZOLINE-1,3-DIAMINE
GW345
C15 H19 N5
GCPJCLJGTVTGRF-UHFFFAOYSA-N
 Ligand Interaction
NDP
Query on NDP

Download SDF File 
Download CCD File 
A, B
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
GW3IC50: 4 nM (98) BINDINGDB
GW3Ki: 0.2 nM (98) BINDINGDB
GW3Ki: 0.22 nM BINDINGMOAD
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Work: 0.155 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 77.910α = 90.00
b = 67.280β = 93.07
c = 38.490γ = 90.00
Software Package:
Software NamePurpose
XENGENdata scaling
XENGENdata reduction
PROFFTrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1998-01-07
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance