1ANV

ADENOVIRUS 5 DBP/URANYL FLUORIDE SOAK


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.310 
  • R-Value Work: 0.204 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Conformational change of the adenovirus DNA-binding protein induced by soaking crystals with K3UO2F5 solutions.

Kanellopoulos, P.N.Tsernoglou, D.van der Vliet, P.C.Tucker, P.A.

(1996) Acta Crystallogr.,Sect.D 52: 942-945

  • DOI: 10.1107/S0907444996005525

  • PubMed Abstract: 
  • Soaking crystals of the C-terminal DNA-binding domain of the adenovirus single-stranded DNA-binding protein with a buffer containing K(3)UO(2)F(5) results in a 9% change of the crystallographic c axis without destruction of the crystals or appreciabl ...

    Soaking crystals of the C-terminal DNA-binding domain of the adenovirus single-stranded DNA-binding protein with a buffer containing K(3)UO(2)F(5) results in a 9% change of the crystallographic c axis without destruction of the crystals or appreciable loss of resolution. The crystals belong to space group P2(1)2(1)2(1) with a = 79.7, b = 75.6 and c = 60.6 A. The three-dimensional structure has been refined to 2.7 A with a crystallographic R factor of 0.206. Antiparallel chains of protein molecules running through the entire crystal are linked by uranyl ions. The relative orientation of protein monomers is flexible, even in the crystalline state, and allows changes in the packing of the protein chains.


    Related Citations: 
    • Alternative Arrangements of the Protein Chain are Possible for the Adenovirus Single-Stranded DNA Binding Protein
      Kanellopoulos, P.N.,Tsernoglou, D.,Van Der Vliet, P.C.,Tucker, P.A.
      (1996) J.Mol.Biol. 257: 1
    • Crystal Structure of the Adenovirus DNA Binding Protein Reveals a Hook-on Model for Cooperative DNA Binding
      Tucker, P.A.,Tsernoglou, D.,Tucker, A.D.,Coenjaerts, F.E.,Leenders, H.,Van Der Vliet, P.C.
      (1994) Embo J. 13: 2994


    Organizational Affiliation

    Structural Biology Programme, European Molecular Biology Laboratory, Heidelberg, Germany.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ADENOVIRUS SINGLE-STRANDED DNA-BINDING PROTEIN
A
356Human adenovirus C serotype 5Gene Names: DBP
Find proteins for P03265 (Human adenovirus C serotype 5)
Go to Gene View: DBP
Go to UniProtKB:  P03265
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
IUM
Query on IUM

Download SDF File 
Download CCD File 
A
URANYL (VI) ION
O2 U
IZLHQJIUOZHTLW-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.310 
  • R-Value Work: 0.204 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 79.700α = 90.00
b = 75.600β = 90.00
c = 60.600γ = 90.00
Software Package:
Software NamePurpose
TNTrefinement
XDSdata reduction
XDSdata scaling
AMoREphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1997-02-12
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance