1AIE | pdb_00001aie

P53 TETRAMERIZATION DOMAIN CRYSTAL STRUCTURE

• PDB DOI: https://doi.org/10.2210/pdb1AIE/pdb

• Classification: P53 TETRAMERIZATION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 1997-04-17 Released: 1997-06-16 
• Deposition Author(s): Mittl, P.R.E., Chene, P., Gruetter, M.G.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 
  0.252 (Depositor), 0.250 (DCC) 
• R-Value Work: 
  0.191 (Depositor), 0.200 (DCC) 
• R-Value Observed: 
  0.191 (Depositor) 

Starting Model: experimental

Literature

Crystallization and structure solution of p53 (residues 326-356) by molecular replacement using an NMR model as template.

Mittl, P.R., Chene, P., Grutter, M.G.

(1998) Acta Crystallogr D Biol Crystallogr 54: 86-89

• PubMed: 9761820 
• DOI: https://doi.org/10.1107/s0907444997006550
• Primary Citation of Related Structures:  
  1AIE


• PubMed Abstract: 
  

  The molecular replacement method is a powerful technique for crystal structure solution but the use of NMR structures as templates often causes problems. In this work the NMR structure of the p53 tetramerization domain has been used to solve the crystal structure by molecular replacement. Since the rotation- and translation-functions were not sufficiently clear, additional information about the symmetry of the crystal and the protein complex was used to identify correct solutions. The three-dimensional structure of residues 326-356 was subsequently refined to a final R factor of 19.1% at 1.5 A resolution.

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Organizational Affiliation: 

Core Drug Discovery Technologies, Ciba-Geigy AG, CH-4002 Basel, Switzerland. [e-mail]

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content 

• Total Structure Weight: 3.77 kDa 
• Atom Count: 335 
• Modeled Residue Count: 31 
• Deposited Residue Count: 31 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
P53	A	31	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P04637 (Homo sapiens) Explore P04637  Go to UniProtKB:  P04637
PHAROS:  P04637 GTEx:  ENSG00000141510

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free:  0.252 (Depositor), 0.250 (DCC) 
• R-Value Work:  0.191 (Depositor), 0.200 (DCC) 
• R-Value Observed: 0.191 (Depositor) 

Space Group: P 4 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.5	α = 90
b = 45.5	β = 90
c = 33.2	γ = 90

Software Package:

Software Name	Purpose
X-PLOR	model building
X-PLOR	refinement
XDS	data reduction
MARSCALE	data scaling
X-PLOR	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 1997-06-16 
Deposition Author(s): Mittl, P.R.E., Chene, P., Gruetter, M.G.

Revision History  

• Version 1.0: 1997-06-16
  Type: Initial release
  
• Version 1.1: 2008-03-24
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Version format compliance
• Version 1.3: 2011-11-16
  Changes: Atomic model
• Version 2.0: 2023-08-02
  Changes: Atomic model, Database references, Other, Refinement description
• Version 2.1: 2024-05-22
  Changes: Advisory, Data collection, Derived calculations