1AEL

NMR STRUCTURE OF APO INTESTINAL FATTY ACID-BINDING PROTEIN, 20 STRUCTURES


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 21 
  • Conformers Submitted: 20 
  • Selection Criteria: FINAL PENALTY FUNCTION VALUES LESS THAN 10.0 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Ligand binding alters the backbone mobility of intestinal fatty acid-binding protein as monitored by 15N NMR relaxation and 1H exchange.

Hodsdon, M.E.Cistola, D.P.

(1997) Biochemistry 36: 2278-2290

  • DOI: 10.1021/bi962018l

  • PubMed Abstract: 
  • The backbone dynamics of the liganded (holo) and unliganded (apo) forms of Escherichia coli-derived rat intestinal fatty acid-binding protein (I-FABP) have been characterized and compared using amide 15N relaxation and 1H exchange NMR measurements. T ...

    The backbone dynamics of the liganded (holo) and unliganded (apo) forms of Escherichia coli-derived rat intestinal fatty acid-binding protein (I-FABP) have been characterized and compared using amide 15N relaxation and 1H exchange NMR measurements. The amide 1H/15N resonances for apo and holo I-FABP were assigned at 25 degrees C, and gradient- and sensitivity-enhanced 2D experiments were employed to measure l5N T1, T2, and [1H]15N NOE values and relative 1H saturation transfer rates. The 15N relaxation parameters were analyzed using five different representations of the spectral density function based on the Lipari and Szabo formalism. A majority of the residues in both apo and holo I-FABP were characterized by relatively slow hydrogen exchange rates, high generalized order parameters, and no conformational exchange terms. However, residues V26-N35, S53-R56, and A73-T76 of apo I-FABP were characterized by rapid hydrogen exchange, low order parameters, and significant conformational exchange. These residues are clustered in a single region of the protein where variability and apparent disorder were previously observed in the chemical shift analyses and in the NOE-derived NMR structures of apo I-FABP. The increased mobility and discrete disorder in the backbone of the apo protein may permit the entry of ligand into the binding cavity. We postulate that the bound fatty acid participates in a series of long-range cooperative interactions that cap and stabilize the C-terminal half of helix II and lead to an ordering of the portal region. This ligand-modulated order-disorder transition has implications for the role of I-FABP in cellular fatty acid transport and targeting.


    Related Citations: 
    • Lipid Binding Proteins: A Family of Fatty Acid and Retinoid Transport Proteins
      Banaszak, L.,Winter, N.,Xu, Z.,Bernlohr, D.A.,Cowan, S.,Jones, T.A.
      (1993) Adv.Protein Chem. 268: 18399
    • The NMR Solution Structure of Intestinal Fatty Acid-Binding Protein Complexed with Palmitate: Application of a Novel Distance Geometry Algorithm
      Hodsdon, M.E.,Ponder, J.W.,Cistola, D.P.
      (1996) J.Mol.Biol. 264: 585
    • Rat Intestinal Fatty Acid Binding Protein. A Model System for Analyzing the Forces that Can Bind Fatty Acids to Proteins
      Sacchettini, J.C.,Gordon, J.I.
      (1993) J.Biol.Chem. 268: 18399
    • Refinement of the Structure of Recombinant Rat Intestinal Fatty Acid-Binding Apoprotein at 1.2-A Resolution
      Scapin, G.,Gordon, J.I.,Sacchettini, J.C.
      (1992) J.Biol.Chem. 267: 4253


    Organizational Affiliation

    Department of Biochemistry & Molecular Biophysics, Washington University School of Medicine, St. Louis, Missouri 63110, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
FATTY ACID-BINDING PROTEIN
A
131Rattus norvegicusGene Names: Fabp2 (Fabpi)
Find proteins for P02693 (Rattus norvegicus)
Go to UniProtKB:  P02693
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 21 
  • Conformers Submitted: 20 
  • Selection Criteria: FINAL PENALTY FUNCTION VALUES LESS THAN 10.0 
  • Olderado: 1AEL Olderado

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1997-04-01
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance