1ADQ

CRYSTAL STRUCTURE OF A HUMAN IGM RHEUMATOID FACTOR FAB IN COMPLEX WITH ITS AUTOANTIGEN IGG FC


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.225 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of human IgM rheumatoid factor Fab bound to its autoantigen IgG Fc reveals a novel topology of antibody-antigen interaction.

Corper, A.L.Sohi, M.K.Bonagura, V.R.Steinitz, M.Jefferis, R.Feinstein, A.Beale, D.Taussig, M.J.Sutton, B.J.

(1997) Nat.Struct.Mol.Biol. 4: 374-381


  • PubMed Abstract: 
  • Rheumatoid factors are the characteristic autoantibodies of rheumatoid arthritis, which bind to the Fc regions of IgG molecules. Here we report the crystal structure of the Fab fragment of a patient-derived IgM rheumatoid factor (RF-AN) complexed wit ...

    Rheumatoid factors are the characteristic autoantibodies of rheumatoid arthritis, which bind to the Fc regions of IgG molecules. Here we report the crystal structure of the Fab fragment of a patient-derived IgM rheumatoid factor (RF-AN) complexed with human IgG4 Fc, at 3.2 A resolution. This is the first structure of an autoantibody-autoantigen complex. The epitope recognised in IgG Fc includes the C gamma 2/C gamma 3 cleft region, and overlaps the binding sites of bacterial Fc-binding proteins. The antibody residues involved in autorecognition are all located at the edge of the conventional combining site surface, leaving much of the latter available, potentially, for recognition of a different antigen. Since an important contact residue is somatic mutation, the structure implicates antigen-driven selection, following somatic mutation of germline genes, in the production of pathogenic rheumatoid factors.


    Related Citations: 
    • Crystallization of a Complex between the Fab Fragment of a Human Immunoglobulin M (Igm) Rheumatoid Factor (Rf-an) and the Fc Fragment of Human Igg4
      Sohi, M.K.,Corper, A.L.,Wan, T.,Steinitz, M.,Jefferis, R.,Beale, D.,He, M.,Feinstein, A.,Sutton, B.J.,Taussig, M.J.
      (1996) Immunology 88: 636


    Organizational Affiliation

    Randall Institute, King's College London, UK.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
IGG4 REA FC
A
206Homo sapiensMutation(s): 0 
Gene Names: IGHG4
Find proteins for P01861 (Homo sapiens)
Go to UniProtKB:  P01861
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
IGM-LAMBDA RF-AN FAB (LIGHT CHAIN)
L
213N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
IGM-LAMBDA RF-AN FAB (HEAVY CHAIN)
H
225N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.225 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 160.350α = 90.00
b = 81.950β = 98.27
c = 64.240γ = 90.00
Software Package:
Software NamePurpose
CCP4data scaling
CCP4data reduction
X-PLORrefinement
DENZOdata reduction
AMoREphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1998-09-16
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance