1ABO

CRYSTAL STRUCTURE OF THE COMPLEX OF THE ABL TYROSINE KINASE SH3 DOMAIN WITH 3BP-1 SYNTHETIC PEPTIDE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Work: 0.156 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

High-resolution crystal structures of tyrosine kinase SH3 domains complexed with proline-rich peptides.

Musacchio, A.Saraste, M.Wilmanns, M.

(1994) Nat.Struct.Mol.Biol. 1: 546-551

  • Primary Citation of Related Structures:  1ABQ, 1FYN

  • PubMed Abstract: 
  • Src-homology 3 (SH3) domains bind to proline-rich motifs in target proteins. We have determined high-resolution crystal structures of the complexes between the SH3 domains of Abl and Fyn tyrosine kinases, and two ten-residue proline-rich peptides der ...

    Src-homology 3 (SH3) domains bind to proline-rich motifs in target proteins. We have determined high-resolution crystal structures of the complexes between the SH3 domains of Abl and Fyn tyrosine kinases, and two ten-residue proline-rich peptides derived from the SH3-binding proteins 3BP-1 and 3BP-2. The X-ray data show that the basic mode of binding of both proline-rich peptides is the same. Peptides are bound over their entire length and interact with three major sites on the SH3 molecules by both hydrogen-bonding and van der Waals contacts. Residues 4-10 of the peptide adopt the conformation of a left-handed polyproline helix type II. Binding of the proline at position 2 requires a kink at the non-proline position 3.


    Related Citations: 
    • Crystal Structure of the SH3 Domain in Human Fyn. Comparison of the Three-Dimensional Structures of the SH3 Domain in Tyrosine Kinases and Spectrin
      Noble, M.E.M.,Musacchio, A.,Courtneidge, S.,Saraste, M.,Wierenga, R.
      (1993) Embo J. 12: 2617
    • Crystal Structure of a Src-Homology 3 (SH3) Domain
      Musacchio, A.,Noble, M.E.M.,Pauptit, R.,Wierenga, R.,Saraste, M.
      (1992) Nature 359: 851
    • Identification of a Ten-Amino Acid SH3 Binding Site
      Ren, R.,Mayer, B.,Clark, K.L.,Baltimore, D.
      (1993) Science 259: 1157


    Organizational Affiliation

    European Molecular Biology Laboratory, Heidelberg, Germany.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ABL TYROSINE KINASE
A, B
62Mus musculusGene Names: Abl1 (Abl)
EC: 2.7.10.2
Find proteins for P00520 (Mus musculus)
Go to UniProtKB:  P00520
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
3BP-1 SYNTHETIC PEPTIDE, 10 RESIDUES
C, D
10Mus musculusGene Names: Sh3bp1 (3bp1)
Find proteins for P55194 (Mus musculus)
Go to UniProtKB:  P55194
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Work: 0.156 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 33.800α = 90.00
b = 54.200β = 96.80
c = 35.000γ = 90.00
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
ARP/wARPmodel building
X-PLORphasing
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1995-10-15
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance