1AAY

ZIF268 ZINC FINGER-DNA COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.195 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Zif268 protein-DNA complex refined at 1.6 A: a model system for understanding zinc finger-DNA interactions.

Elrod-Erickson, M.Rould, M.A.Nekludova, L.Pabo, C.O.

(1996) Structure 4: 1171-1180

  • DOI: 10.1016/s0969-2126(96)00125-6
  • Primary Citation of Related Structures:  
    1AAY

  • PubMed Abstract: 
  • Zinc fingers of the Cys2 His2 class recognize a wide variety of different DNA sequences and are one of the most abundant DNA-binding motifs found in eukaryotes. The previously determined 2.1 A structure of a complex containing the three zinc fingers ...

    Zinc fingers of the Cys2 His2 class recognize a wide variety of different DNA sequences and are one of the most abundant DNA-binding motifs found in eukaryotes. The previously determined 2.1 A structure of a complex containing the three zinc fingers from Zif268 has served as a basis for many modeling and design studies, and Zif268 has proved to be a very useful model system for studying how TFIIIA-like zinc fingers recognize DNA.


    Related Citations: 
    • Zinc Finger-DNA Recognition: Crystal Structure of a Zif268-DNA Complex at 2.1 A
      Pavletich, N.P., Pabo, C.O.
      (1991) Science 252: 809

    Organizational Affiliation

    Howard Hughes Medical Institute, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.



Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
PROTEIN (ZIF268 ZINC FINGER PEPTIDE)A90Mus musculusMutation(s): 0 
Gene Names: Egr1Egr-1Krox-24
Find proteins for P08046 (Mus musculus)
Explore P08046 
Go to UniProtKB:  P08046
NIH Common Fund Data Resources
IMPC  MGI:95295
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 1
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3')B11N/A
    • Find similar nucleic acids by:  Sequence   |   Structure
    • Entity ID: 2
      MoleculeChainsLengthOrganismImage
      DNA (5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3')C11N/A
      Small Molecules
      Ligands 1 Unique
      IDChainsName / Formula / InChI Key2D Diagram3D Interactions
      ZN
      Query on ZN

      Download CCD File 
      A
      ZINC ION
      Zn
      PTFCDOFLOPIGGS-UHFFFAOYSA-N
       Ligand Interaction
      Experimental Data & Validation

      Experimental Data

      • Method: X-RAY DIFFRACTION
      • Resolution: 1.60 Å
      • R-Value Free: 0.242 
      • R-Value Work: 0.195 
      • R-Value Observed: 0.195 
      • Space Group: C 2 2 21
      Unit Cell:
      Length ( Å )Angle ( ˚ )
      a = 45.4α = 90
      b = 56.2β = 90
      c = 130.8γ = 90
      Software Package:
      Software NamePurpose
      X-PLORmodel building
      X-PLORrefinement
      DENZOdata reduction
      SCALEPACKdata scaling
      X-PLORphasing

      Structure Validation

      View Full Validation Report



      Entry History 

      Deposition Data

      Revision History 

      • Version 1.0: 1997-04-21
        Type: Initial release
      • Version 1.1: 2008-05-22
        Changes: Version format compliance
      • Version 1.2: 2011-07-13
        Changes: Version format compliance