1A6S

M-DOMAIN FROM GAG POLYPROTEIN OF ROUS SARCOMA VIRUS, NMR, 20 STRUCTURES


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 1000 
  • Conformers Submitted: 20 
  • Selection Criteria: LEAST RESTRAINT VIOLATION 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Solution structure and dynamics of the bioactive retroviral M domain from Rous sarcoma virus

McDonnell, J.M.Fushman, D.Cahill, S.M.Zhou, W.Wolven, A.Wilson, C.B.Nelle, T.D.Resh, M.D.Wills, J.Cowburn, D.

(1998) J.Mol.Biol. 279: 921-928

  • DOI: 10.1006/jmbi.1998.1788

  • PubMed Abstract: 
  • A biologically active construct of the retroviral M domain from the avian Rous sarcoma virus is defined and its solution structure described. This M domain is fully active in budding and infectivity without myristylation. In spite of a sequence homol ...

    A biologically active construct of the retroviral M domain from the avian Rous sarcoma virus is defined and its solution structure described. This M domain is fully active in budding and infectivity without myristylation. In spite of a sequence homology level that suggests no relationship among M domains and the family of matrix proteins in mammalian retroviruses, the conserved structural elements of a central core allow an M domain sequence motif to be described for all retroviruses. The surface of the M domain has a highly clustered positive patch comprised of sequentially distant residues. An analysis of the backbone dynamics, incorporating rotational anisotropy, is used to estimate the thermodynamics of proposed domain oligomerization.


    Related Citations: 
    • Crystal Structure of Siv Matrix Antigen and Implications for Virus Assembly
      Rao, Z.,Belyaev, A.S.,Fry, E.,Roy, P.,Jones, I.M.,Stuart, D.I.
      (1995) Nature 378: 743
    • Three-Dimensional Structure of the Human Immunodeficiency Virus Type 1 Matrix Protein
      Massiah, M.A.,Starich, M.R.,Paschall, C.,Summers, M.F.,Christensen, A.M.,Sundquist, W.I.
      (1994) J.Mol.Biol. 244: 198
    • Three-Dimensional Structure of the Htlv-II Matrix Protein and Comparative Analysis of Matrix Proteins from the Different Classes of Pathogenic Human Retroviruses
      Christensen, A.M.,Massiah, M.A.,Turner, B.G.,Sundquist, W.I.,Summers, M.F.
      (1996) J.Mol.Biol. 264: 1117
    • The Solution Structure of the Bovine Leukaemia Virus Matrix Protein and Similarity with Lentiviral Matrix Proteins
      Matthews, S.,Mikhailov, M.,Burny, A.,Roy, P.
      (1996) Embo J. 15: 3267
    • A Large Region within the Rous Sarcoma Virus Matrix Protein is Dispensable for Budding and Infectivity
      Nelle, T.D.,Wills, J.W.
      (1996) J.Virol. 70: 2269


    Organizational Affiliation

    The Rockefeller University, 1230 York Avenue, New York, NY 10021, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
GAG POLYPROTEIN
A
87Rous sarcoma virus (strain Prague C)Gene Names: gag-pro
EC: 3.4.23.-
Find proteins for P03322 (Rous sarcoma virus (strain Prague C))
Go to UniProtKB:  P03322
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 1000 
  • Conformers Submitted: 20 
  • Selection Criteria: LEAST RESTRAINT VIOLATION 
  • Olderado: 1A6S Olderado
Software Package:
Software NamePurpose
DYANArefinement
DYANAmodel building
XWINNMRrefinement
XWINNMRmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1998-10-14
    Type: Initial release
  • Version 1.1: 2008-03-03
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance