1A3P | pdb_00001a3p

ROLE OF THE 6-20 DISULFIDE BRIDGE IN THE STRUCTURE AND ACTIVITY OF EPIDERMAL GROWTH FACTOR, NMR, 20 STRUCTURES


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 1000 
  • Conformers Submitted: 20 
  • Selection Criteria: 20 BEST, BASED ON STEREOCHEMICAL AND NOE ENERGIES 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

Role of the 6-20 disulfide bridge in the structure and activity of epidermal growth factor.

Barnham, K.J.Torres, A.M.Alewood, D.Alewood, P.F.Domagala, T.Nice, E.C.Norton, R.S.

(1998) Protein Sci 7: 1738-1749

  • DOI: https://doi.org/10.1002/pro.5560070808
  • Primary Citation Related Structures: 
    1A3P

  • PubMed Abstract: 

    Two synthetic analogues of murine epidermal growth factor, [Abu6, 20] mEGF4-48 (where Abu denotes amino-butyric acid) and [G1, M3, K21, H40] mEGF1-48, have been investigated by NMR spectroscopy. [Abu6, 20] mEGF4-48 was designed to determine the contribution of the 6-20 disulfide bridge to the structure and function of mEGF. The overall structure of this analogue was similar to that of native mEGF, indicating that the loss of the 6-20 disulfide bridge did not affect the global fold of the molecule. Significant structural differences were observed near the N-terminus, however, with the direction of the polypeptide chain between residues four and nine being altered such that these residues were now located on the opposite face of the main beta-sheet from their position in native mEGF. Thermal denaturation experiments also showed that the structure of [Abu6, 20] mEGF4-48 was less stable than that of mEGF. Removal of this disulfide bridge resulted in a significant loss of both mitogenic activity in Balb/c 3T3 cells and receptor binding on A431 cells compared with native mEGF and mEGF4-48, implying that the structural changes in [Abu6, 20] mEGF4-48, although limited to the N-terminus, were sufficient to interfere with receptor binding. The loss of binding affinity probably arose mainly from steric interactions of the dislocated N-terminal region with part of the receptor binding surface of EGF. [G1, M3, K21, H40] mEGF1-48 was also synthesized in order to compare the synthetic polypeptide with the corresponding product of recombinant expression. Its mitogenic activity in Balb/c 3T3 cells was similar to that of native mEGF and analysis of its 1H chemical shifts suggested that its structure was also very similar to native.


  • Organizational Affiliation
    • Biomolecular Research Institute, Parkville, Victoria, Australia.

Macromolecule Content 

  • Total Structure Weight: 4.88 kDa 
  • Atom Count: 338 
  • Modeled Residue Count: 45 
  • Deposited Residue Count: 45 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
EPIDERMAL GROWTH FACTOR45Mus musculusMutation(s): 2 
UniProt
Find proteins for P01132 (Mus musculus)
Explore P01132 
Go to UniProtKB:  P01132
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01132
Sequence Annotations
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Reference Sequence

Small Molecules

Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
ABA
Query on ABA
A
L-PEPTIDE LINKINGC4 H9 N O2ALA

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 1000 
  • Conformers Submitted: 20 
  • Selection Criteria: 20 BEST, BASED ON STEREOCHEMICAL AND NOE ENERGIES 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1998-07-29
    Type: Initial release
  • Version 1.1: 2008-03-03
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2018-03-14
    Changes: Database references, Derived calculations, Experimental preparation, Other
  • Version 1.4: 2025-03-26
    Changes: Data collection, Database references, Derived calculations, Structure summary