1A0P

SITE-SPECIFIC RECOMBINASE, XERD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.287 
  • R-Value Work: 0.224 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of the site-specific recombinase, XerD.

Subramanya, H.S.Arciszewska, L.K.Baker, R.A.Bird, L.E.Sherratt, D.J.Wigley, D.B.

(1997) EMBO J. 16: 5178-5187

  • DOI: 10.1093/emboj/16.17.5178

  • PubMed Abstract: 
  • The structure of the site-specific recombinase, XerD, that functions in circular chromosome separation, has been solved at 2.5 A resolution and reveals that the protein comprises two domains. The C-terminal domain contains two conserved sequence moti ...

    The structure of the site-specific recombinase, XerD, that functions in circular chromosome separation, has been solved at 2.5 A resolution and reveals that the protein comprises two domains. The C-terminal domain contains two conserved sequence motifs that are located in similar positions in the structures of XerD, lambda and HP1 integrases. However, the extreme C-terminal regions of the three proteins, containing the active site tyrosine, are very different. In XerD, the arrangement of active site residues supports a cis cleavage mechanism. Biochemical evidence for DNA bending is encompassed in a model that accommodates extensive biochemical and genetic data, and in which the DNA is wrapped around an alpha-helix in a manner similar to that observed for CAP complexed with DNA.


    Organizational Affiliation

    Laboratory of Molecular Biophysics, Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
SITE-SPECIFIC RECOMBINASE XERD
A
290Escherichia coli (strain K12)Gene Names: xerD (xprB)
Find proteins for P0A8P8 (Escherichia coli (strain K12))
Go to UniProtKB:  P0A8P8
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.287 
  • R-Value Work: 0.224 
  • Space Group: P 65
Unit Cell:
Length (Å)Angle (°)
a = 102.950α = 90.00
b = 102.950β = 90.00
c = 55.900γ = 120.00
Software Package:
Software NamePurpose
CCP4model building
CCP4phasing
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1998-03-18
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance