1A0E | pdb_00001a0e

XYLOSE ISOMERASE FROM THERMOTOGA NEAPOLITANA

• PDB DOI: https://doi.org/10.2210/pdb1A0E/pdb

• Classification: KETOLISOMERASE
• Organism(s): Thermotoga neapolitana
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 1997-11-28 Released: 1998-06-03 
• Deposition Author(s): Gallay, O., Chopra, R., Conti, E., Brick, P., Blow, D.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Free: 
  0.203 (Depositor), 0.198 (DCC) 
• R-Value Work: 
  0.180 (Depositor), 0.177 (DCC) 
• R-Value Observed: 
  0.180 (Depositor) 

Starting Model: experimental

Literature

Crystal Structures of Class II Xylose Isomerases from Two Thermophiles and a Hyperthermophile

Gallay, O., Chopra, R., Conti, E., Brick, P., Jackson, R., Hartley, B., Vieille, C., Zeikus, J.G., Blow, D.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content 

• Total Structure Weight: 102.02 kDa 
• Atom Count: 7,274 
• Modeled Residue Count: 886 
• Deposited Residue Count: 886 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
XYLOSE ISOMERASE	A, B [auth D]	443	Thermotoga neapolitana	Mutation(s): 0  Gene Names: XYLA EC: 5.3.1.5
UniProt
Find proteins for P45687 (Thermotoga neapolitana) Explore P45687  Go to UniProtKB:  P45687

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CO	C [auth A], D [auth A], E [auth A], F [auth D], G [auth D], H [auth D]	COBALT (II) ION Co XLJKHNWPARRRJB-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.70 Å
• R-Value Free:  0.203 (Depositor), 0.198 (DCC) 
• R-Value Work:  0.180 (Depositor), 0.177 (DCC) 
• R-Value Observed: 0.180 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 161.79	α = 90
b = 121.87	β = 90
c = 98.86	γ = 90

Software Package:

Software Name	Purpose
X-PLOR	model building
X-PLOR	refinement
MADNES	data reduction
CCP4	data scaling
X-PLOR	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 1998-06-03 
Deposition Author(s): Gallay, O., Chopra, R., Conti, E., Brick, P., Blow, D.

Revision History  

• Version 1.0: 1998-06-03
  Type: Initial release
  
• Version 1.1: 2008-03-24
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Version format compliance
• Version 1.3: 2018-04-18
  Changes: Data collection, Other
• Version 2.0: 2024-02-07
  Changes: Atomic model, Data collection, Database references, Derived calculations
• Version 2.1: 2024-04-03
  Changes: Advisory, Derived calculations, Refinement description