173D

MULTIPLE BINDING MODES OF ANTICANCER DRUG ACTINOMYCIN D: X-RAY, MOLECULAR MODELING, AND SPECTROSCOPIC STUDIES OF D(GAAGCTTC)2-ACTINOMYCIN D COMPLEXES AND ITS HOST DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Work: 0.202 
  • R-Value Observed: 0.202 

wwPDB Validation   3D Report Full Report


This is version 1.6 of the entry. See complete history


Literature

Multiple Binding Modes of Anticancer Drug Actinomycin D: X-Ray, Molecular Modeling, and Spectroscopic Studies of D(Gaagcttc)2-Actinomycin D Complexes and its Host DNA

Kamitori, S.Takusagawa, F.

(1994) J Am Chem Soc 116: 4154


Macromolecules

  • Find similar proteins by:  Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
ACTINOMYCIN D CD11Streptomyces antibioticusMutation(s): 0 
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 1
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3')A, B8N/A
    Small Molecules
    Modified Residues  2 Unique
    IDChainsTypeFormula2D DiagramParent
    MVA
    Query on MVA
    C,DL-PEPTIDE LINKINGC6 H13 N O2VAL
    SAR
    Query on SAR
    C,DPEPTIDE LINKINGC3 H7 N O2GLY
    Biologically Interesting Molecules (External Reference) 1 Unique
    Entity ID: 2
    IDChainsNameType/Class2D Diagram3D Interactions
    PRD_000001
    Query on PRD_000001
    C, DActinomycin DPolypeptide /  Antibiotic

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    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 3.00 Å
    • R-Value Work: 0.202 
    • R-Value Observed: 0.202 
    • Space Group: F 2 2 2
    Unit Cell:
    Length ( Å )Angle ( ˚ )
    a = 69.9α = 90
    b = 61.41β = 90
    c = 54.25γ = 90
    Software Package:
    Software NamePurpose
    X-PLORrefinement

    Structure Validation

    View Full Validation Report



    Entry History 

    Deposition Data

    Revision History 

    • Version 1.0: 1994-10-15
      Type: Initial release
    • Version 1.1: 2011-06-14
      Changes: Version format compliance
    • Version 1.2: 2011-07-13
      Changes: Version format compliance
    • Version 1.3: 2011-07-27
      Changes: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary
    • Version 1.4: 2012-02-15
      Changes: Other
    • Version 1.5: 2012-12-12
      Changes: Other
    • Version 1.6: 2017-11-01
      Changes: Advisory, Derived calculations