8D0K

Human CST-DNA polymerase alpha/primase preinitiation complex bound to 4xTEL-foldback template - PRIM2C advanced PIC


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.27 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structures of the human CST-Pol alpha-primase complex bound to telomere templates.

He, Q.Lin, X.Chavez, B.L.Agrawal, S.Lusk, B.L.Lim, C.J.

(2022) Nature 608: 826-832

  • DOI: https://doi.org/10.1038/s41586-022-05040-1
  • Primary Citation of Related Structures:  
    8D0B, 8D0K

  • PubMed Abstract: 

    The mammalian DNA polymerase-α-primase (Polα-primase) complex is essential for DNA metabolism, providing the de novo RNA-DNA primer for several DNA replication pathways 1-4 such as lagging-strand synthesis and telomere C-strand fill-in. The physical mechanism underlying how Polα-primase, alone or in partnership with accessory proteins, performs its complicated multistep primer synthesis function is unknown. Here we show that CST, a single-stranded DNA-binding accessory protein complex for Polα-primase, physically organizes the enzyme for efficient primer synthesis. Cryogenic electron microscopy structures of the CST-Polα-primase preinitiation complex (PIC) bound to various types of telomere overhang reveal that template-bound CST partitions the DNA and RNA catalytic centres of Polα-primase into two separate domains and effectively arranges them in RNA-DNA synthesis order. The architecture of the PIC provides a single solution for the multiple structural requirements for the synthesis of RNA-DNA primers by Polα-primase. Several insights into the template-binding specificity of CST, template requirement for assembly of the CST-Polα-primase PIC and activation are also revealed in this study.


  • Organizational Affiliation

    Department of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CST complex subunit CTC11,246Homo sapiensMutation(s): 0 
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Find proteins for Q2NKJ3 (Homo sapiens)
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Go to UniProtKB:  Q2NKJ3
PHAROS:  Q2NKJ3
GTEx:  ENSG00000178971 
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UniProt GroupQ2NKJ3
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
CST complex subunit STN1374Homo sapiensMutation(s): 0 
Gene Names: STN1OBFC1
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Find proteins for Q9H668 (Homo sapiens)
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PHAROS:  Q9H668
GTEx:  ENSG00000107960 
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UniProt GroupQ9H668
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
CST complex subunit TEN1152Homo sapiensMutation(s): 0 
Gene Names: TEN1C17orf106
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Find proteins for Q86WV5 (Homo sapiens)
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Go to UniProtKB:  Q86WV5
GTEx:  ENSG00000257949 
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UniProt GroupQ86WV5
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
DNA primase small subunit434Homo sapiensMutation(s): 0 
Gene Names: PRIM1
EC: 2.7.7.102
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Find proteins for P49642 (Homo sapiens)
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PHAROS:  P49642
GTEx:  ENSG00000198056 
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UniProt GroupP49642
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
DNA primase large subunit523Homo sapiensMutation(s): 0 
Gene Names: PRIM2PRIM2A
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Find proteins for P49643 (Homo sapiens)
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PHAROS:  P49643
GTEx:  ENSG00000146143 
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UniProt GroupP49643
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
DNA polymerase alpha catalytic subunit1,527Homo sapiensMutation(s): 0 
Gene Names: POLA1POLA
EC: 2.7.7.7
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Find proteins for P09884 (Homo sapiens)
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PHAROS:  P09884
GTEx:  ENSG00000101868 
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UniProt GroupP09884
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
DNA polymerase alpha subunit B612Homo sapiensMutation(s): 0 
Gene Names: POLA2
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Find proteins for Q14181 (Homo sapiens)
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PHAROS:  Q14181
GTEx:  ENSG00000014138 
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Entity ID: 8
MoleculeChains LengthOrganismImage
DNA (5'-D(P*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*A)-3')60Homo sapiens
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.27 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR00GM131023

Revision History  (Full details and data files)

  • Version 1.0: 2022-06-22
    Type: Initial release
  • Version 1.1: 2022-08-17
    Changes: Database references
  • Version 1.2: 2022-09-07
    Changes: Database references
  • Version 1.3: 2024-02-14
    Changes: Data collection