7O74

Structure of cyanase from Pseudomonas lactis

• PDB DOI: https://doi.org/10.2210/pdb7O74/pdb

• Classification: LYASE
• Organism(s): Pseudomonas lactis
• Mutation(s): No 


• Deposited: 2021-04-12 Released: 2021-04-21 
• Deposition Author(s): Brag, S., Driller, J.H., Pedersen, B.P.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.61 Å
• R-Value Free: 0.190 
• R-Value Work: 0.164 
• R-Value Observed: 0.164 

Literature

Structure determination and analysis of unintentionally crystallized cyanase from Pseudomonas lactis

Brag, S., Driller, J.H., Pedersen, B.P.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D5  (Explore in 3D)
Global Stoichiometry: Homo 10-mer - A10 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 169.7 kDa 
• Atom Count: 13,985 
• Modelled Residue Count: 1,560 
• Deposited Residue Count: 1,560 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cyanate hydratase	A, B, C, D, E, F, G, H, I, J	156	Pseudomonas lactis	Mutation(s): 0  EC: 4.2.1.104
UniProt
Find proteins for A0A218ZZ45 (Pseudomonas lactis) Explore A0A218ZZ45  Go to UniProtKB:  A0A218ZZ45

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CL	K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth G], Q [auth H], R [auth I], S [auth J]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.61 Å
• R-Value Free: 0.190 
• R-Value Work: 0.164 
• R-Value Observed: 0.164 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 130.146	α = 90
b = 117.592	β = 94.26
c = 106.991	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2021-04-21 
Deposition Author(s): Brag, S., Driller, J.H., Pedersen, B.P.

Revision History  

• Version 1.0: 2021-04-21
  Type: Initial release
  
• Version 1.1: 2024-01-31
  Changes: Data collection, Database references, Refinement description