6RVS

Atomic structure of the Epstein-Barr portal, structure II


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.59 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Atomic structure of the Epstein-Barr virus portal.

Machon, C.Fabrega-Ferrer, M.Zhou, D.Cuervo, A.Carrascosa, J.L.Stuart, D.I.Coll, M.

(2019) Nat Commun 10: 3891-3891

  • DOI: https://doi.org/10.1038/s41467-019-11706-8
  • Primary Citation of Related Structures:  
    6RVR, 6RVS

  • PubMed Abstract: 

    Herpesviridae is a vast family of enveloped DNA viruses that includes eight distinct human pathogens, responsible for diseases that range from almost asymptomatic to severe and life-threatening. Epstein-Barr virus infects B-cells and epithelial cells, causing infectious mononucleosis, as well as a number of cancers. Epstein-Barr infection cannot be cured since neither vaccine nor antiviral drug treatments are available. All herpesviruses contain a linear double-stranded DNA genome, enclosed within an icosahedral capsid. Viral portal protein plays a key role in the procapsid assembly and DNA packaging. The portal is the entrance and exit pore for the viral genome, making it an attractive pharmacological target for the development of new antivirals. Here we present the atomic structure of the portal protein of Epstein-Barr virus, solved by cryo-electron microscopy at 3.5 Å resolution. The detailed architecture of this protein suggests that it plays a functional role in DNA retention during packaging.


  • Organizational Affiliation

    Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), Baldiri Reixac 10-12, 08028, Barcelona, Spain.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Portal protein
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
613human gammaherpesvirus 4Mutation(s): 0 
Gene Names: BBRF1
UniProt
Find proteins for Q3KSR9 (Epstein-Barr virus (strain GD1))
Explore Q3KSR9 
Go to UniProtKB:  Q3KSR9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ3KSR9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.59 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Spanish Ministry of Economy and CompetitivenessSpainRYC-2011-09071
Spanish Ministry of Science, Innovation, and UniversitiesSpainBFU-2014-53550-P
Spanish Ministry of Science, Innovation, and UniversitiesSpainBFU2017-83720-P
Spanish Ministry of Science, Innovation, and UniversitiesSpainMDM-2014-0435
Spanish Ministry of Science, Innovation, and UniversitiesSpainSEV-2013-0347
European Commission653706

Revision History  (Full details and data files)

  • Version 1.0: 2019-09-18
    Type: Initial release
  • Version 1.1: 2019-12-18
    Changes: Other