6L8D

Hexameric structure of the ATPase subunit of magnesium chelatase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.91 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.233 
  • R-Value Observed: 0.234 

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This is version 1.2 of the entry. See complete history


Literature

Hexameric structure of the ATPase motor subunit of magnesium chelatase in chlorophyll biosynthesis.

Gao, Y.S.Wang, Y.L.Wang, X.Liu, L.

(2020) Protein Sci 29: 1040-1046

  • DOI: https://doi.org/10.1002/pro.3816
  • Primary Citation of Related Structures:  
    6L8D

  • PubMed Abstract: 

    Magnesium chelatase (MgCh) is a heterotrimeric enzyme complex, composed of two AAA+ family subunits that can assembly into a double ring structure and a large catalytic subunit. The small AAA+ subunit has ATPase activity and can self-oligomerize into a ring structure, while the other AAA+ subunit lacks independent ATPase activity. Previous structural studies of the ATPase motor subunit of MgCh from a bacteriochlorophyll-synthesizing bacterium have identified a unique ATPase clade, but the model of oligomeric assembly is unclear. Here we present the hexameric structure of the MgCh ATPase motor subunit from the chlorophyll-synthesizing cyanobacterium Synechocystis sp. PCC 6803. This structure reveals details of how the hexameric ring is assembled, and thus provides a basis for further studying the heterotrimeric complex.


  • Organizational Affiliation

    School of Life Sciences and Anhui Key Laboratory of Modern Biomanufacturing, Anhui University, Hefei, Anhui, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Magnesium-chelatase subunit ChlI
A, B, C, D, E
A, B, C, D, E, F
365Synechocystis sp. PCC 6803 substr. KazusaMutation(s): 0 
Gene Names: chlIslr1030
EC: 6.6.1.1
UniProt
Find proteins for P51634 (Synechocystis sp. (strain PCC 6803 / Kazusa))
Explore P51634 
Go to UniProtKB:  P51634
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP51634
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.91 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.233 
  • R-Value Observed: 0.234 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 211.034α = 90
b = 121.149β = 99.06
c = 119.419γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-01-15
    Type: Initial release
  • Version 1.1: 2020-04-08
    Changes: Database references
  • Version 1.2: 2023-11-22
    Changes: Data collection, Database references, Refinement description