Download MendeleySulfolobus solfataricus 2-keto-3-deoxygluconate aldolase Y132V,T157C variant
Crennell, S.J., Danson, M.J., Royer, S.To be published.
6GV2
Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase Y103F,Y130F,A198F variant in complex with L-2-keto, 3-deoxy-galactonate
- PDB DOI: https://doi.org/10.2210/pdb6GV2/pdb
- Classification: HYDROLASE
- Organism(s): Saccharolobus solfataricus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2018-06-20 Released: 2019-07-03
- Funding Organization(s): Biotechnology and Biological Sciences Research Council
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.212
- R-Value Work: 0.164
- R-Value Observed: 0.167
This is version 2.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase | 294 | Saccharolobus solfataricus | Mutation(s): 3 EC: 4.1.2.55 |  | |
UniProt | |||||
Find proteins for O54288 (Saccharolobus solfataricus) Explore O54288 Go to UniProtKB: O54288 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O54288 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SSH Query on SSH | C [auth A], I [auth B] | 3-DEOXY-D-ARABINO-HEXONIC ACID C6 H12 O6 YGMNHEPVTNXLLS-VAYJURFESA-N |  | ||
| GOL Query on GOL | F [auth A] G [auth A] H [auth A] L [auth B] M [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| GXV Query on GXV | D [auth A], J [auth B] | L-glyceraldehyde C3 H6 O3 MNQZXJOMYWMBOU-GSVOUGTGSA-N |  | ||
| EDO Query on EDO | E [auth A], K [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| KPI Query on KPI | A, B | L-PEPTIDE LINKING | C9 H16 N2 O4 |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.212
- R-Value Work: 0.164
- R-Value Observed: 0.167
- Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 103.478 | α = 90 |
| b = 103.478 | β = 90 |
| c = 245.551 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| BALBES | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2019-07-03 Deposition Author(s): Crennell, S.J., Danson, M.J., Royer, S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Biotechnology and Biological Sciences Research Council | United Kingdom | -- |
Revision History (Full details and data files)
- Version 1.0: 2019-07-03
Type: Initial release - Version 2.0: 2023-11-29
Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Source and taxonomy, Structure summary - Version 2.1: 2024-01-17
Changes: Refinement description
