6GBU

Crystal structure of the second SH3 domain of FCHSD2 (SH3-2) in complex with the fourth SH3 domain of ITSN1 (SH3d)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.44 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.212 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

A Flat BAR Protein Promotes Actin Polymerization at the Base of Clathrin-Coated Pits.

Almeida-Souza, L.Frank, R.A.W.Garcia-Nafria, J.Colussi, A.Gunawardana, N.Johnson, C.M.Yu, M.Howard, G.Andrews, B.Vallis, Y.McMahon, H.T.

(2018) Cell 174: 325-337.e14

  • DOI: https://doi.org/10.1016/j.cell.2018.05.020
  • Primary Citation of Related Structures:  
    6GBU

  • PubMed Abstract: 

    Multiple proteins act co-operatively in mammalian clathrin-mediated endocytosis (CME) to generate endocytic vesicles from the plasma membrane. The principles controlling the activation and organization of the actin cytoskeleton during mammalian CME are, however, not fully understood. Here, we show that the protein FCHSD2 is a major activator of actin polymerization during CME. FCHSD2 deletion leads to decreased ligand uptake caused by slowed pit maturation. FCHSD2 is recruited to endocytic pits by the scaffold protein intersectin via an unusual SH3-SH3 interaction. Here, its flat F-BAR domain binds to the planar region of the plasma membrane surrounding the developing pit forming an annulus. When bound to the membrane, FCHSD2 activates actin polymerization by a mechanism that combines oligomerization and recruitment of N-WASP to PI(4,5)P 2 , thus promoting pit maturation. Our data therefore describe a molecular mechanism for linking spatiotemporally the plasma membrane to a force-generating actin platform guiding endocytic vesicle maturation.


  • Organizational Affiliation

    MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK. Electronic address: lalmeida@mrc-lmb.cam.ac.uk.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
F-BAR and double SH3 domains protein 2A,
C,
G [auth E],
H [auth G]
63Homo sapiensMutation(s): 0 
Gene Names: FCHSD2KIAA0769SH3MD3
UniProt & NIH Common Fund Data Resources
Find proteins for O94868 (Homo sapiens)
Explore O94868 
Go to UniProtKB:  O94868
PHAROS:  O94868
GTEx:  ENSG00000137478 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO94868
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Intersectin-1B,
D,
E [auth F],
F [auth H]
65Homo sapiensMutation(s): 0 
Gene Names: ITSN1ITSNSH3D1A
UniProt & NIH Common Fund Data Resources
Find proteins for Q15811 (Homo sapiens)
Explore Q15811 
Go to UniProtKB:  Q15811
PHAROS:  Q15811
GTEx:  ENSG00000205726 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ15811
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.44 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.212 
  • Space Group: I 21 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 186.984α = 90
b = 186.984β = 90
c = 186.984γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (United Kingdom)United KingdomU105178795
European Molecular Biology OrganizationUnited Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2018-06-13
    Type: Initial release
  • Version 1.1: 2018-06-20
    Changes: Data collection, Database references
  • Version 1.2: 2018-07-25
    Changes: Data collection, Database references
  • Version 1.3: 2024-01-17
    Changes: Data collection, Database references, Refinement description