General and sequence-specific roles for DNA in glucocorticoid receptor DNA-binding stoichiometry
Pufall, M.A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Glucocorticoid receptor | A [auth B], D [auth A] | 72 | Homo sapiens | Mutation(s): 0  Gene Names: NR3C1, GRL | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P04150 (Homo sapiens) Explore P04150  Go to UniProtKB:  P04150 | |||||
PHAROS:  P04150 GTEx:  ENSG00000113580  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04150 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*TP*GP*CP*AP*AP*AP*TP*GP*TP*AP*CP*TP*AP*GP*CP*T)-3') | B [auth C] | 16 | synthetic construct | ||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*AP*AP*GP*CP*TP*AP*GP*TP*AP*CP*AP*TP*TP*TP*GP*C)-3') | C [auth D] | 16 | synthetic construct | ||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | E [auth B], F [auth B], G [auth A], H [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 38.231 | α = 90 |
b = 88.235 | β = 90 |
c = 103.905 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Science Foundation (NSF, United States) | United States | CAREER grant 1552862 |
National Institutes of Health/National Cancer Institute (NIH/NCI) | United States | K99/R00 CA149088 |